Cyprinus carpio (common carp): 109097793
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Entry
109097793 CDS
T05134
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109097793 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109097793 (mtrex)
03041 Spliceosome [BR:
ccar03041
]
109097793 (mtrex)
03009 Ribosome biogenesis [BR:
ccar03009
]
109097793 (mtrex)
03016 Transfer RNA biogenesis [BR:
ccar03016
]
109097793 (mtrex)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109097793 (mtrex)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109097793 (mtrex)
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109097793 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
109097793 (mtrex)
Ribosome biogenesis [BR:
ccar03009
]
Eukaryotic type
Pre-60S particles
Helicases
109097793 (mtrex)
Transfer RNA biogenesis [BR:
ccar03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109097793 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109097793
NCBI-ProteinID:
XP_042588229
UniProt:
A0A8C1RXQ0
LinkDB
All DBs
Position
B10:complement(7341682..7372376)
Genome browser
AA seq
1038 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKATPKSAAQAGSNRKTADKGGKQQSDSAAACKRDADND
GPEEVVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPADEEYTPLKPRV
GKAAKEYPFILDPFQREAILCLDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYT
DYRPTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSSGNAGGKWDPKGR
KGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVF
NNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATET
FAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEK
MKKLEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKK
EDLDFGWGIVVNFQKKTNVKAAVGDADPLFVVEVLLHCSKDSVKNAATEAAKPAGPGEKG
EMQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMG
IKDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKKART
VLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQ
ATALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDTYLNQFRP
HLMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA
TGITKIKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttct
agcaaaaaagccaccccaaagtccgcagctcaggcaggttctaacagaaagactgctgat
aaaggtggtaaacagcagagcgattcggcagctgcgtgtaaaagagatgctgataatgac
gggccagaagaggtggtgctcgggaaaagacagaagctggaaacagtgtcagccgaggag
atcaatctgtcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggc
tgcactcacgaggtggttcttcctgcagacgaggaatacactccactgaaaccacgcgtt
ggaaaagcagctaaggagtaccccttcatactcgaccctttccagcgcgaggccatcctg
tgcctcgataacaaccagtctgtgcttgtgtcggcccacacatcggcaggaaagaccgtg
tgtgcggagtatgccattgctctggctctgcgagaaaagcagcgagtgatcttcaccagc
cccatcaaagctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtt
ggtctgatgaccggtgacgtcaccatcaaccccacggcttcctgcctggttatgaccacc
gagattttgaggagcatgctgtacagagggtcagaggttatgagggaggtggcgtgggtc
atctttgatgagatccattacatgagagactcagagcgtggagtggtctgggaggaaacc
atcatcctactgccggacaacgtgcatcatgtcttcctgtccgccaccattcccaacgct
cgacagtttgccgagtggatttgtcaccttcacaaacagccctgccacgtggtgtacaca
gactaccgccccactcctctgcagcactacgtctttccagcagggggtgatggactccac
cttgttgtggatgagaacggagagttcagagaagacaattttaacacagcaatgcaggtc
ctgagggatgcaggggactcgagtggcaacgctgggggcaaatgggaccccaaaggcaga
aagggtggaaccaaaggtccatccaatgtctttaagattgtgaagatgatcatggaaagg
aacttccagccggtgattatcttcagcttcagtaagaaagaatgtgaggcctatgcactg
caggtggctaaactggatttcaacacagacgatgagaagaaactggtggaagaagtgttc
aacaacgccacagactgcctgtctgatgaagacaaaaagctgccacaggtggagcatgtt
ctgccgttgctgaagagaggaattggaattcatcatggcggcctcctcccgatcctgaaa
gagaccattgagatcctgttctctgaggggctgataaaggccttgtttgctacagaaacg
tttgccatgggaatcaacatgcctgcgagaaccgtactcttcaccagtgcacgcaaattt
gacggcaaagacttccgctggatcacctccggagagtatatccagatgtcaggacgtgct
ggcagaagaggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagc
cccgcggtgggcaaacagttactgaagggttcggcggatcctctgaacagtgcgttccac
ctgacctacaacatggtgctcaatctactgcgcgtggaggagatcaacccagagtacatg
ctggagaaatccttctaccagttccagcactatagagccgtgcctggtgttgtggagaag
atgaaaaagctggaggaggagtataatgcaatacgaatccctaatgaagagagcgtggtg
acctactacaagatccgtcagcagctggccaaactgggcaaagaaatcgaggagtttatt
cacaaacctagatactgcctgcctttcctgcagccgggcagactggtcagggtgaaaaaa
gaagatctggatttcggttggggtatagtcgtcaatttccaaaagaagacaaatgtcaag
gctgcagttggggatgctgacccattatttgtggtggaggttctgctccactgcagcaaa
gacagcgtgaagaacgcagccacggaggcagccaaaccagcaggcccaggagaaaagggc
gagatgcaggttgttcctgtgattcttcatctcatcacctccattagctctgtgcgcctc
tacatccccaaagacctgcggccgtatgacaaccgacagagcatgcttaaatccatacag
gaggtccagaagcgtttcccagatggggttcctctgctagatcccatagatgacatgggt
atcaaggatccagcgctgaagaaggtcattcagaaggtggaggcgttcgagcacaggatg
tacacacaccccctgcacagcgaccccaacctggaggccgtttacactctgtgtgagaag
aaagcgctgattgcaggcgacattaaagcggcgaagcgcgagctaaagaaagcacgcacc
gtgctgcagatggacgagctgaagtgcaggaagcgtgttctgcggcgcctgggattcgcc
acttcctctgatgtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagat
gagctgctgctgacagagatggtgtttaatggtctgttcaacgacctgacggcggagcag
gccactgcactcctcagtgtctttgtcttccaggaaaacgctaacgagatgcccaaactg
acggagcagctggccgggccgcttcgacagatgcaggaatgtgccaagcgtattgctaag
gtgtccgcggaggccaagctggacgtggatgaggacacttacctgaaccagttccgcccg
cacctgatggatgtggtctacacctgggccaacggctcctcattctctcagatatgcaaa
atgacagacgtgtttgaaggcagtattatccgctgtatgcgcagattggaggagctcttg
aggcagatgtgccaggcagccaaggccattggaaacacagagctggagaataagtttgcc
acgggtataacgaagattaagagggatatcgtgtttgctgccagtctttacctgtga
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integrated database retrieval system
