Cyprinus carpio (common carp): 109098418
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Entry
109098418 CDS
T05134
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109098418 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
109098418 (ddx39b)
03015 mRNA surveillance pathway
109098418 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109098418 (ddx39b)
03041 Spliceosome [BR:
ccar03041
]
109098418 (ddx39b)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109098418 (ddx39b)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109098418 (ddx39b)
Spliceosome [BR:
ccar03041
]
Complex C
Other components
EJC/TREX
109098418 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109098418 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
109098418
NCBI-ProteinID:
XP_042632689
UniProt:
A0A8C1R0S8
LinkDB
All DBs
Position
A19:15871090..15880910
Genome browser
AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAGGVGDTGLGHNDGIISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgacgttgagaacgagctgttggattatgaggaggatgaggtggatgca
ggtggtgtcggggacacaggacttggacacaacgatggcataatatccatcaggaaagaa
ggggtcaaaggctcatatgtgtccatccactcctcgggattcagggatttccttctcaaa
ccagaactgctgagagctatagtggactgtggctttgaacacccatctgaggttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaagtctggaatg
gggaagacggctgtctttgtgttggccacccttcagcagctggagccagtgaccgggcag
gtgtcagtgttggtgatgtgtcacacccgagagctggccttccagatcagcaaagagtac
gagcgcttctccaaatacatgcccagtgtcaaggtggcagtgttctttggtggtttatct
ataaagaaggacgaggaggttctgaagaaagagagccctcatgtggtggtgggaactcct
ggacgtattctagctctgtctcgcaacaagagtctcaacctgcgccacatcaagcacttc
atcctggacgaatgcgacaagatgctggagcaacttgacatgcggcgtgatgtccaggag
atctttcgcatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagctgacacttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcctggatgtgttggagttcaaccaggtggtgatcttc
gtgaagtccgtgcagcgttgtattgctctggctcagttgctggtggagcaaaatttccct
gccatcgccattcatagagcaatgcctcaagacgaaagattagctcgatatcagcagttc
aaggatttccagagacggatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgccttcaactacgacatgcctgaagattcagacacatacctgcac
agggttgcaagggctggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgcccgcactttgaacgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcatcatatattgagcaaacacgataa
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