Cyprinus carpio (common carp): 109098744 Help Entry 109098744         CDS       T05134                                  Name (RefSeq) huntingtin-like   KO K04533   huntingtin Organism ccar  Cyprinus carpio (common carp) Brite KEGG Orthology (KO) [BR:ccar00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccar03019]     109098744    04131 Membrane trafficking [BR:ccar04131]     109098744    03029 Mitochondrial biogenesis [BR:ccar03029]     109098744 Messenger RNA biogenesis [BR:ccar03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      109098744 Membrane trafficking [BR:ccar04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     109098744 Mitochondrial biogenesis [BR:ccar03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     109098744 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_EF3_N HEAT_2 Vac14_Fab1_bd HEAT_ECM29 Motif Other DBs NCBI-GeneID:  109098744 NCBI-ProteinID:  XP_042615166 UniProt:  A0A9Q9Y7T3 LinkDB All DBs Position A1:complement(25455537..25497324) Genome browser AA seq 3122 aa AA seqDB search MATMEKLMKAFESLKSFQQQQGPLSAEELVQKQKKDLATTKKDRVTHCLTICENIVAQSL RTSPEFQKLLGIAMEMFLLCSDDKESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK KNAASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLSSSIPKI MAALGHFANDGEIKMLLKAFVANLKSSSPTIRRTAASSAVSVCQHSRRTHYFYTWLLNVL LSLVVPVDEEHSSHLILGVLLTLRYLMPLLQQQAPNTSLKGSFGLVRKEADITPTPEQLI QVYEVTLHYTQHWDHNVVTASLELLQQVFRTPPPELLNALITRGKISHTSVFREETVCRA RSGSILELIAGGSTCSPLLLRKQKGKLLSGEEEGLEDDPERAEVTTGSFSASVGGDSSSE APSSSGVSSLGTSDIITEQPRSSQHALQPGDSVDLSASEQGVGPDTPDEEDEEDMLSRSS SGGAGVVSTSGDLVSEGNQMSMGAVLSSPPSDSSQTTTEGPDSAVTPSDCAELVLDGSDS QYSGMQIGTLQDEEEEGAAPPPDKPPELFSQSALALSKPHLLEGKGHNRQSSDSSVDRFI PKEEVLEAAELDNKPSRIKGDIGHYTDPKEEPLVHCVRLLAASFLLTGQRNGLVPDNEVR VSVKALAVSCVGAAATLLPESFFNKLYLHPLEVQEPDEQQYISDILQYIEHGDPQIRGAT AILCGALIQAIQLKTRYNTETWLSQIHSVTGNSVTLENFVPLLQRSLKDESSVTCKMACA AVRHCIMALCSGSLSELGLQLLIDLLTLKDCSYWLVRTELLETLAEIDFRLVSFLERKTE KLHKGEHHYTGLLRLQDRVLNDVVLYLLGDEDPRVRHVAANTISRLVPRLFFDCDQAQTD PVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLGQSAPDVTVENNLSRVIAA VSHALTSSTSRATTFGCCEALWLLSNTFPVCTWSTGWHCGFVSSSVFHLNRSSQYRSQGR SFSLSQPGGSEDMRRSLTVGVASMVLSLISSAWFPLDLSAHQSALLLAGNLLAAVAPKCM KSPWAGEEESNSAPSKVEEPWPALNDRSLVVMVEQLFSHLLKILNICAHVLDDTPPGPAV KATLPSLGNTPSLSPIRRKGKEKEMTEPSTTPMSPKKGGEANTGRSADSTATPAVNKSTN LGSFYHLPPYLKLYDALRATHANYKVTLDLHNTNEKFGSFLRSALDVLSQLLEMATLHDI GQSMTSKSKSCVEEILGYLKSCFSREPTMATVCVQQLLKALFGTNLASQYEGASSHPCRS QGKALRLGSTSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDASGWFDVMQKVS NQLRSSITNVTRHRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQVLDLLTQLVQL RVNYCLLDSDQVFIGFRAEAVLSILKWGQFRDSEEIVPNIFFFLVLLSYERYHSKQIISI PKIIQLCDGIMASDRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQKEVVVSMLLR LIQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQMHLDSHEALGVLNTL FETVAPSSLRPVDMLLKSMFITPSTLASVGTVQLWVSGILAILRVLISQSTEDIILSRIQ ELSLSPYLLSCPTIRRLCDDDPSPPEAPPTTMEDTNGESQHVPPEETFARFLLQLVGVLL DDIATKQVKVDMSEQQHTFYCQQLGTLLMCLIHIFKSGMFRRITAAGSRLLKAEGGEGGN FYALEGLNSLVLQLITTHPSLVLLWCQVLLIINYTNYTWWSEVHQTPRRHSLSSTKLLSP HSSGEEERPEGKLAMCNREIVRRGALILFCDYVCQNLHDSEHLTWLTVNHVSDLISLSHE PPVQDLISAVHRNSAASGLFIQAIQSRCDNLSTPVMLKKTLQCLEGIHLSQSGALLMLYV DKLLSTPFRVLARMVDTLACRRVEMLLAETLQNSIAQLPLEELDRIQQYLQTSGLAQRHQ RFYSLLDRFRATIAEDTTSPAAPITSHPLDGDPPPAPENVEPNKEWYVALVKSQCCLRGE GALYETTELLTKLPQSDLNAIMTCKDFNLCLLASCLSVGVQRVCKDHETVIFDTAQQVAF ERLAGVIELLPSPHQPLLPSTQMCADYWQKLNQVYSEPGFYQTVLSLCGVLSQYLLSLSK LPSSLHIPKDKETLITTFSTLAIEVVVWRLLQDQLPLSVDMQISLSCLCLALQQPAVWTH FASHTYLTHTCSIVHCIQLLIHAVAVGPGDQLLRPERKTEQSEDQLDSADKQLEWRCCEI MAELVEGLQSVLALGHHRNKNIPAFLTPILRNVIISLARLPVVNSYTRIPSLVWKLGWSP RPSGEFGTALPEIPVEFLQEKDVFREFLYRINTLGWSSRTQFEETWATLLGVLVTQPITM DQEEETQQEEDLERTQINVLAVQAITSLVLSAMTLPTAGNPAVSCPEQQPRNKILKALDT RFGRKLSVIRGMVEREIQAMVSKRDNIATHFPYHAWDPVPSLSSSTAGTLISHEKLLLQI NTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWGEDEEDEADAPAPASPQLSPINSRK HRAGVDIHSCSQFLLELYSQWILPGSPSSKKTPVVLLSEVVRSLLAVSDLFTERNQFDMM FSTLTELQKVHPPEDEILNQYLVPAICKAAAVLGMDKAIAEPVCRLLESTLRSTHLPSRI GALHGVLYVLECDLLDDTARQLIPTVSEYLLSNLRAIAQCVNLHNQQHVLVMCAVAFYMM ENYPLDVGSEFNAGIIQLCCMMLSASEEATPSIIYHCILRGLERLLLSEQLSRVDAETLV KLSVERVNMPSPHRAMAALGLMLTCMYTGKEKGSPGRPADADPTAPDSESVIVAMERVSV LFDRIRKGFPSEARVVARILPQFLDDFFPLQDVMNKVIGEFLSNQQPYPQFMATVVYKVF QTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLPHVISRM GKSDTVDISLFCLVAMDFYRHQIDEELDRRAFQSVFEMVASPGSPYYQLLCCLQSIHHDT SL NT seq 9369 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaagctgatgaaggcgtttgagtcgctcaaatctttccagcagcag caaggcccgctgtcggccgaggagctcgtccagaaacaaaaaaaagaccttgctacaacc aaaaaggacagagtgacccattgcctgacgatatgtgaaaacatcgtggcacagtcgctg aggacatctccagagttccagaagcttctcggaatcgctatggaaatgttcttgttgtgc agcgatgacaaggagtctgacgtcaggatggtggcagatgagtgcctcaacaaaatcatc aaagcattgatggattccaacttgcctaggctgcagcttgaactgtacaaagagattaaa aagaacgctgcctctcggagtctgcgggccgccttgtggaggtttgctgagcttgctcac ctagtgcgtccacagaaatgcaggccgtaccttgtgaatctactgccgtgtctgacacgg atcacaaaacgtcaggaggagacggtgcaggaaactctttcttcttcaattcctaaaatc atggctgccctgggtcacttcgccaatgatggagagatcaagatgctgttgaaggctttt gttgccaatctgaagtccagttctcccactattcgccgaacagcggccagctcggctgtc agcgtgtgtcagcactcacgcagaacacactacttctacacctggctcctcaacgtgctg ctcagtttggtagtgccagtggatgaggaacattccagtcacctgattctgggtgtatta ctgacgttgcgctacctgatgcctcttcttcagcagcaggctcctaacaccagcctgaag ggcagctttggtcttgttcgtaaagaggcagatatcacccctacacctgagcagctcatt caggtgtatgaagtgaccctgcactacacgcagcactgggatcataatgtggtgacagca tctttggagcttcttcagcaggtgtttcgcactcctccccctgagctcttgaacgcactc atcacacgtggcaaaatatcacacaccagtgtctttagagaagagacagtgtgccgcgca cgaagtggcagcatcctcgagcttattgctggtgggtcaacatgcagtcctctcctcctc aggaagcagaaaggtaagctgttgtcaggtgaagaggagggtttggaagatgaccctgag agggcagaggtcaccacaggatcattctctgcctcggttggcggcgacagctccagtgaa gctccctcctcatcaggcgtttcgtctcttggcacatctgacatcatcacagagcagcca cgctcctcccagcatgccttgcagccgggagactcagtggacctgagtgcatcagagcag ggtgtagggcctgatactccagatgaggaagacgaggaggacatgctaagtcgcagctca agcgggggcgccggggtcgtcagcacatctggtgacttagtaagcgaaggcaaccagatg tcgatgggagcagtgttgtcgtcgccccctagtgatagttcccagacgactacggagggg ccggactccgccgtgacgccttcagactgcgccgagcttgtgctggatggcagtgatagt cagtattcagggatgcagatcggcacactgcaggatgaggaagaggagggcgcagctcca ccgcctgataaacctccagagcttttctctcagtcagcactggctttaagtaagccccat cttctggagggaaaaggtcacaacaggcaatcatctgatagcagtgtggatcgattcata ccaaaggaagaggttctggaagctgcagaactcgacaacaagccatctaggattaaagga gatattggtcactatactgacccaaaggaagagcctctggtgcactgtgtccggctgttg gctgcctccttcctgctcaccggccaaagaaatgggttggttcctgataatgaggtccgt gtgagcgttaaggcattagccgttagctgtgtgggggcagcagctactcttctacctgaa tccttcttcaacaaactctacttgcacccactagaagtacaagagccagatgagcaacag tacatcagtgatatactgcagtacattgaacatggggatcctcagatcagaggagccaca gccatcctgtgtggagctttaatccaagccatccagctcaagacacgctacaacacggag acatggctgtcccagatccactctgtcacaggaaactctgtgacacttgaaaactttgtg cctctgctacagcgaagtctaaaagatgaatcttcagtcacatgtaaaatggcctgtgct gctgttaggcactgtatcatggcgttgtgcagtggcagtctaagtgaacttggcctgcag ctgctcattgatctgctgaccctgaaggactgctcctattggctggttcgcactgagctt ttggagacgcttgctgagattgatttccggttagtaagtttcttggagagaaaaacggag aagttgcacaaaggagagcatcactataccggtttgttgaggctccaggacagggttcta aatgatgttgtgctttatctactgggcgatgaggacccacgtgtgagacatgtggcagca aacaccatcagcaggttggtgcccaggttgttctttgactgtgaccaggctcagacagac cctgttgtggccatagctcgagatcagagcagtgtgtacctgcagctgctaatgcacgag acccagcctccatcacagttcactgtcagcactattacacgaacataccgtggctacaat ctgggtcagagcgcaccggatgtaacagtggagaacaacctatcacgggtcatcgctgcc gtctcccacgccctcacctcttccacttccagagccacgacctttggctgttgtgaggct ctgtggcttttgtccaacaccttcccagtgtgcacttggagcacaggctggcattgtggg tttgtgtcctcttccgtctttcatctcaaccgctccagccagtaccgcagccaaggacgt tcctttagtctctctcagcctggtggtagtgaggacatgcgccggtctctgacggtcggt gtggccagtatggttttgtctctcatctcctctgcctggtttcctcttgatctgtctgcc catcagtctgctctgcttctggctggaaaccttctcgcagctgttgcaccaaagtgcatg aagagcccgtgggcaggtgaggaggagtctaactccgccccctcgaaggtagaggagccg tggcctgctcttaacgaccgctctctggttgttatggtggagcagctgttctcacacctg ctgaagatccttaacatctgcgcccatgtgctggatgacacacccccaggccctgcggtc aaggctactttaccctcattgggcaacactccatctctcagtccaatcagacggaagggg aaagagaaggagatgacggagccgagcaccacccccatgagcccaaagaaaggaggagaa gccaacacaggcagatcggcagacagcacagcgacaccagcagttaacaaatccaccaat ctgggcagcttttatcacctccctccttatctgaagctttatgatgcactgagagctaca catgccaactacaaagtcacattagaccttcacaacactaatgagaagtttgggagcttc ctgaggtcggcgcttgatgtcctttcacagctgcttgagatggccaccctgcatgatatt gggcaaagtatgacgtcaaagtctaagtcatgtgttgaagagatcctgggttacctcaag tcctgtttctcacgggaacccactatggccactgtgtgtgttcagcagctgttgaaggcg ttgtttgggaccaatcttgcatctcagtatgagggggcttcatctcacccatgtcggtcc cagggcaaggccctccggctcggctcgaccagtgttagacccggcctctaccattactgt ttcatggctccatacactcactttacacaggccctcgcagatgccagcctcagaaacatg gtgcaagctgaacaagaacaggacgcctctgggtggtttgatgtcatgcaaaaagtctcc aatcaactgaggtcaagtatcaccaatgtcactcgccaccgaggagacaagaatgccatt cataatcacatccgtttgtttgagccgctggtgataaaggctctgaagcagtacaccacc agcacctcagtggccctacaaagacaggtgctggacctactcacccaacttgtgcagctc cgggtcaactactgtttgcttgattcagaccaggtattcattgggtttcgtgctgaagca gttttgagtatattgaagtgggggcagttcagggactctgaagagattgtgcccaacatt ttctttttcctggttctgctgtcctatgagcgctaccactccaaacagatcatcagcatc ccaaagatcattcagctttgtgatggcatcatggccagtgacaggaaggcagtgacacac gcaatccctgcactgcagcctatagtacacgatctctttgtgctgcggggctccaataaa gcagatgcagggaaggagctggacactcagaaggaggtggtggtatccatgctgctacga ctcatacaacaccatcaggtgctggagatgtttattctagtcctacagcagtgccataaa gagaatgaagataagtggaagaggctttcacggcagattgctgacatcatcctaccaatg atcggcaaacagcaaatgcatctggactcccatgaggctttgggtgtgttaaacacactg ttcgagacagtggctccctcctctctgcggcctgtggacatgctactgaagagcatgttc atcacaccttctacactagcatcagtgggtacggtgcagttgtgggtgtctgggattctc gccatcctgcgtgtcctcatctcacagtccacagaggacatcattctgtctcgtattcag gagctttctttgtcgccatacctcctttcctgtcccaccatccgtcgattgtgtgatgat gacccctcccctcctgaagctccgcccaccaccatggaagacaccaatggagagtcgcag catgtccctcctgaggaaacgtttgctaggttcttattgcagttagtgggggtgttgctg gatgatatcgccactaaacaggtgaaagttgacatgagtgaacaacagcacacgttctac tgtcagcagctgggcacactgctcatgtgtttgatccacatcttcaaatcaggaatgttc cgtcggatcacggcagcgggcagcaggctgttgaaggctgagggaggggaggggggtaat ttttatgctttggagggtttgaacagcctggtgcttcagctcatcactacacacccatct ctggtcctgctctggtgtcaggtccttctcatcatcaactacaccaactacacctggtgg tcagaggtgcatcagacacccaggaggcacagtctgtccagcactaagctgctgagtccg cactcatctggagaggaggagaggcctgaggggaagttggctatgtgtaacagagagatc gtccgacgaggagcacttatcctcttctgtgactatgtgtgtcaaaacctgcatgactct gagcatctgacgtggctgacagtgaatcatgtgagtgatctgatcagtctttcccatgag cctccagtgcaggatctcatcagtgctgtgcaccgaaattcggcagccagcggactcttc atacaggctatacaatcacgctgcgacaacctttctactccggtaatgctgaagaagacc ctgcagtgtctggagggcattcatctaagtcagtctggggctctgctaatgctatacgtg gacaagctactcagcacgccgttccgtgtgctggctcgcatggtggacacactcgcctgc agacgtgtggagatgctgcttgctgagaccttgcagaatagtatcgctcagcttccactg gaggagctggacaggattcagcagtacctgcagaccagtggccttgcgcaaaggcatcag cggttctactccctgctggacaggttcagagccactattgctgaagataccacgagccct gccgcccccattacctcacacccactggatggggacccgccccctgcccctgaaaatgtg gaacccaataaagagtggtatgttgctctggtgaaatctcagtgttgtttgagaggtgaa ggagctctatatgaaactacagagctgttgacaaaacttcctcagtctgacctgaacgca atcatgacctgcaaggactttaacttgtgtctgctggcatcatgtctgagtgtcggggta cagagggtgtgtaaggatcatgagacggttatatttgacacagctcaacaggtggccttc gagcgattggctggtgtcattgagctcctcccctcccctcatcagcccctcctaccctcc acccaaatgtgtgcggactattggcagaagcttaatcaagtctacagtgagcctgggttt tatcagacggtgttgagtctgtgtggcgtgttgagtcagtacctgctgtctctgtccaag ctgccgtcctcactgcacattcccaaagacaaagagacactcattaccaccttcagcacc ctcgccatagaggtggtggtttggcgtttgctgcaggatcagctgcctctgagtgtggac atgcaaataagtctgtcgtgtctgtgtctggctctccagcagccggcagtgtggacacac ttcgcctcacacacctacctcacacacacctgctcaatcgtccactgtatacagctcctc atccacgcagtcgctgttggtcctggtgaccagcttctgaggccggagcggaaaacagag cagtcagaagaccagttggactctgcagataaacaacttgaatggcggtgttgtgagatc atggccgagctggttgaaggtctgcaaagtgtgctggctctgggtcaccatagaaacaag aacattccagcattccttacacctatcctacggaatgtcatcatcagcctcgccaggctg cccgttgtaaacagctacacccgaatcccatcactggtctggaagctgggctggtccccc aggccgagtggagaatttggcacagcattgccagagatccctgtagagttcctgcaggag aaagacgtcttcagagagttcctctaccgcattaacactctgggctggagcagtcggaca cagtttgaggagacgtgggctactctgttgggagtgctggtcactcagccaatcacgatg gaccaagaagaggaaacccagcaagaggaggatctggagaggactcagatcaatgtactg gcggttcaggccatcacctctctggtgctgagtgccatgactttgccaacagcaggaaat ccagccgtcagctgccctgaacagcaaccccgcaacaaaatccttaaagctctggacacc aggtttggtcgcaagctgagtgtgattagaggtatggttgagcgtgagattcaggccatg gtgtcaaagagggacaacatcgccacacacttcccctatcatgcctgggaccccgtgcca tccttatcatcctcaacggcaggcacgctcatcagccatgagaaactcctgctgcagatt aacacagagagggagatgggcaacatggactacaaactgggtcaagtgtcaatacactca gtgtggttgggaaataacatcacccctctgagggaggaggagtggggtgaggatgaggaa gatgaagcagatgctccagcacctgcctctccacaattatcgccgatcaactccaggaag caccgtgctggggttgacatccattcctgctcacagttccttctggagctctacagtcag tggatcctccctggcagccccagtagcaagaagactcctgttgtgctcctcagtgaggtg gtcagatcgctgctggcagtgtctgatctcttcactgagaggaatcagtttgatatgatg ttctccactctgactgagctgcagaaggtccatccaccagaagatgagattctcaaccag taccttgtgccagcaatctgcaaagcagcggcagtgcttggcatggataaagccatcgca gagcctgtgtgccgtctgttggagagcactttgcgcagcactcatctgcccagtcgaatt ggcgctcttcacggagttctgtacgtgctggagtgcgaccttctggacgatacggcacgc cagcttatacctaccgtcagtgaatacctgctctctaaccttagagctatagcacaatgt gtgaatctacacaaccaacagcatgtgttggtgatgtgcgccgtggcattctacatgatg gagaactaccccctggatgtagggtccgagttcaatgctgggatcattcagctgtgctgt atgatgctgtctgctagtgaggaggccacaccatccatcatctaccactgcattctgcga ggtctggagcggttgcttctgtctgagcagttgtcgcgtgtggacgcagagacgctagtc aagctgagcgttgagcgtgtgaacatgcccagcccacaccgtgccatggctgccctgggt ctcatgctcacctgcatgtacacagggaaggagaagggaagtcctgggcgccctgctgat gcagaccccacagctcctgacagcgaatcggtcattgtcgcaatggagcgtgtatccgtc ctgtttgacaggattcgcaaaggctttccgagtgaggcgcgtgtggtagcccggatcctt cctcagttcctggatgactttttcccactgcaggacgtcatgaataaagtcattggggag ttcctgtccaatcagcagccttacccgcaattcatggctacagtggtatacaaggtattt cagacacttcatgcaactgggcagtcctccatggtgcgtgactgggtgctactctcgctg tcaaacttcacacagaggacgcctgtcgccatggcaatgtggagcttgtcatgtttcttt gtcagtgcctcgaccagtcagtggatctctgccctcctgcctcatgtcatcagtcgcatg gggaagtccgacacagtggacattagcctcttttgtctggtagctatggatttctaccga caccagattgatgaagagttagaccgcagggccttccagtcggtctttgagatggtggct tcacctggtagtccgtattaccaattactgtgctgtttgcagagcattcaccatgacacg tcactataa

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