Cyprinus carpio (common carp): 109099237
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Entry
109099237 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04382
Cornified envelope formation
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
ccar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109099237
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109099237
09142 Cell motility
04820 Cytoskeleton in muscle cells
109099237
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109099237
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccar04147
]
109099237
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109099237
Exosome [BR:
ccar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109099237
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109099237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109099237
NCBI-ProteinID:
XP_042616713
UniProt:
A0A9Q9YAM9
LinkDB
All DBs
Position
A7:complement(29591198..29630793)
Genome browser
AA seq
1683 aa
AA seq
DB search
MNLKSLAAVLLVFLTISTEVRKSESAACHGCGTGTKCDCSGVKGQRGEQGFPGLTGQPGV
PGFPGPEGPIGSRGEKGDDGPTGPSGPKGIRGPPGLPGFPGTPGIPGLPGLDGPPGLRGV
PGCNGTKGERGFPGSPGFPGLQGPSGPPGSTGQKGEPGDVIDINRLSENGDPGFNGLPGS
RGEPGPPGLPGPVGPSGPRGYEGRLGPPGPQGPKGNMGLNFQGPKGEKGDRGLKGPPGPP
GQVGEVSGLPDTVIQQGEKGDRGEPGEPGFPGLPGSPGPQGGQKGEKGEPGELGKRGKPG
KDGEQGLSGYPGDKGEPGPPGLSGRDGATGEKGDRGPPGPPSYRGGPFPGGIGPKGDSGS
PGYPGPKGDRGLTGIQGPPGPQGLAGTGGPGPSGSPGLPGEKGEKGDEGQPGISLPGPPG
RTGPPGPQGVSGPPGPPGIFNEIQCDRGPPGTPGLQGKQGFQGETGQKGQKGETCVNCFS
NGNPVPGPPGFPGPPGNPGAPGLPGSKGDRGFPGGPGIMGPPGIPGPQGPLGFPGEKGDP
GDSLSVLGVKGEKGDTGFPGPTGLPGLEGRPGRDGVPGPPGLRGPPGSALVKGAQGPPGE
PGLPGSSGDRGLPGPPGFGPQGPPGEKGIQGVSGRPGGPGAPGQKGEPGLAVSDKGERGP
PGRDGNPGFPGSPGNPGPPGQPGFPGLPGSKGDPGLPGIGLPGPPGSKGFPGIAGSPGGP
GIPGRPGSDGLPGQSGLPGPKGEPGFGLPGPPGPAGFPGSKGVVGTKGDSGFPGIPGAPG
RPGLDGAPGPKGDPGFPGGTGPRGPPGLPAFGLQGPPGPPGAPGSLGTPGVPGANGEKGD
RGPPGLSIPGLQGDRGNPGFPGPPGLAGPPGGPGLPGQDGLSGLPGPKGDMGEMGAPGPA
GTPGNPGRQGFPGPKGDGGVPGQPGNPGFPGTKGDRGDPGIPGPPGIDSSRNQLKGLKGD
SGAPGLSGPPGAKGIPGIRGDPGLPGQDGRPGXPGPPGPKGDPGISGTPGSPGAPGVKGN
MGEMGLPGVPGVKGNSGQPGRPGQPGTPGAPGFLGPKGDAGSPGFGLPGTPGPKGEPGPS
GFPGTPGLKGQPGLPGSSGFPGTSGPKGEPGLPGFQGAPGIPGPKGLDGAPGPAGPSGAP
GRPGDPGRNGLPGLSGDKGLAGRDGIPGPPGQKGEPGAPGLGGPGPPGFPGLPGPKGDPG
FPGPPGNSGFSGPKGEAGFTGLPGPIGPVGPPGPPGLPLQGPKGIQGPPGSPGRAGPAGP
AGPPGPEGQRGPPGIGGVKGEKGMPGFPGTPGAPGLKGDYGSPGFPGSPGNPGPSGPKGD
PGTPGSPGFPGSKGQPGLPGANGIPGERGDTGTAGPPGDPGYAPEPIFLKGERGPPGPPG
TPGSRGPSGPLGLQGLPGSPGNPGDPGPMGPPGFTGSPGKKGNAGPAGQPGQRGYPGPPG
PEGIQGPPGISGSSSAAHGFLITRHSQTTDVPACPGDTTLIYDGYSLLYVQGNERAHGQD
LGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQSMPMNMAPITGERIKPFIS
RCSVCEAPAMVIAIHSQTIQVPSCPDYWDILWIGYSFMMHTSAGAEGSGQALASPGSCLE
EFRSSPFIECHGRGTCNYYSNSYSFWLATVDVNEMFRKPQSETLKAGNLETRVSRCIVCM
KRT
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaagagtctcgccgcggtgttactggtgttcctcactataagtactgaggtg
cgcaaatcggagtctgcggcgtgtcatggttgtgggactggaacaaagtgtgactgtagt
ggagtgaaaggacagaggggtgagcaagggtttccaggtttaacgggtcaaccaggtgtt
ccaggtttccctggaccagagggaccgattggatctcgtggagagaagggtgatgatgga
cctacagggccaagcgggcctaaaggaataagaggacctcctggattaccaggtttccca
ggaacaccaggaatcccaggtctgcccggactggatggccccccaggactcagaggagtt
cctggctgtaacggaaccaaaggtgaaagaggattcccaggaagtccaggttttccaggt
ttacaaggtccatcaggtccaccaggttctacaggacaaaagggggagcctggggatgtc
atagatattaatcgcctttcagaaaacggggatcctggctttaatggtttaccaggctcc
aggggtgaacctggacccccgggtcttccaggtcctgttggtccttctggtccccgtggg
tatgagggtcgtctaggccctcctggtccacaagggccaaagggaaacatgggtttgaac
ttccaaggacccaaaggagagaagggtgaccgtggattaaaaggacctcctgggccaccg
gggcaggttggcgaagtgtcaggcttacctgacacagtcattcaacaaggagaaaagggt
gatcgcggcgaacctggagaacctggttttccaggtctccctggctcccccggtccacaa
gggggccagaaaggtgagaaaggagaacctggggagcttggaaagaggggaaaacctggc
aaagatggtgaacaaggcctctctggatatccaggtgataaaggagaaccaggtcctcct
ggtctgtcggggcgagatggtgcaacaggtgagaaaggagatcgaggacctcctggacct
ccatcatacaggggtgggccattcccaggtggaataggaccaaaaggagacagtggttcg
ccaggatatcctggccctaaaggagatagaggactgacaggtattcaggggccgcctggg
ccacagggtcttgcaggaactggaggtccagggccttccggttcaccaggtttacctgga
gagaaaggagaaaaaggggatgagggacaacctggaatctccctccctggaccacctggg
agaacaggtccacctggtccccaaggagtctcaggacctcctggtcccccaggaatattc
aacgaaatacaatgtgatcgtggtcctcctggtactccaggcctgcaggggaagcaagga
tttcaaggagaaacaggacagaagggtcaaaaaggagagacatgcgtcaattgtttcagt
aatggaaaccctgtcccaggacccccagggtttccaggtcctcctggaaatccaggtgca
cctggtttgcctggatctaaaggagacagaggattcccgggagggccagggatcatgggc
ccacctggaataccaggacctcagggtccccttggattccctggagagaagggcgaccca
ggcgatagcctctctgttcttggtgtgaaaggagaaaagggagacacaggctttcctggc
ccaacaggcctgccgggactcgaaggaagacctggtcgtgatggagttcctggtccccca
ggcctcagaggtccacctggttcagcattggtgaaaggagcacaaggtccaccaggtgaa
cctggcttgccaggatcttcaggagacaggggtctacctggtcccccaggatttggtcct
cagggccctcctggagagaaaggtatccagggtgtttcaggacgaccggggggccctgga
gcaccaggtcagaaaggtgaacctgggttggcagtgtcagataaaggtgaacgtggaccc
ccaggacgtgacggaaatccaggttttccaggaagtccaggtaatcctggcccaccagga
cagcctgggttcccaggcttacctggatccaaaggagatcctggtcttcctggtattggt
ttgccaggaccccctggttctaaaggatttcctggtattgctggttctcctggtggaccc
ggtattcctggacgaccaggttcggatggactgcctggtcagtctggattacctggaccc
aaaggagagcctggttttggtctacccggccctccaggtcctgcaggattccctggcagt
aaaggtgtcgtcggtactaaaggtgattctggtttccctggaatccctggtgcaccaggt
cgtccaggtcttgacggtgcccctggacctaaaggtgatcctggttttcctggtggtact
ggtcctcgtggccccccggggctccctgcctttggtcttcagggcccccctggtcctcca
ggagctcctggttctttggggactcctggagtccctggtgcgaatggagagaaaggagac
cggggccccccaggtttgagcattccagggttgcaaggtgacagaggaaatcctggattt
cctggacctcctggtctagctggtccacctgggggtccaggactacctggtcaagatggg
ctatcaggactgcctgggcctaagggagacatgggtgagatgggtgctccaggacctgca
ggtacccctggcaaccctggcagacaaggctttccaggaccaaaaggagatggcggtgtc
ccaggacaaccaggaaacccaggtttcccaggaacaaagggagacagaggtgacccaggc
attccaggcccacctggcatagactcatctagaaatcaacttaaaggactaaaaggagat
tccggagctccaggtttaagcggaccaccaggagcaaagggtattcccggtatccgtgga
gatcctggtctccctgggcaagatggtaggccaggtnctccaggacctccaggccccaaa
ggtgatcctggtatctcaggaactccagggtctccaggagccccaggagttaagggtaac
atgggggagatgggattaccaggagttcctggagtgaaaggaaactccggccaaccaggc
cgacctggccagcctggaaccccaggagcaccagggttcctgggacccaaaggtgatgct
ggctcaccaggatttggattaccaggaactcctgggccaaagggtgaaccaggcccttca
ggatttcctggaacccctggtctgaaaggccagcctggccttccaggatcttcaggattt
cccggtacctctggaccaaagggtgagccaggactcccaggattccaaggtgcacctggc
attcctggccctaaaggtttggatggtgctccaggccctgctggtcctagtggagcacct
ggtaggccaggagatcctggacgaaatggattacctggcctctctggtgataaaggtctt
gctgggcgtgacggtattcctggacctccaggacaaaagggtgaaccaggtgctccaggc
cttggtggcccaggcccacccggtttccccggtttaccagggcctaaaggagaccctgga
tttccgggacctcctggtaattctggattttctggtccaaagggggaggcaggattcact
gggttgcctggtccaattggtcctgtaggaccaccggggcctccaggcctgcctctgcaa
ggacctaaaggtatccaaggcccacctggttcccccggaagagctggcccggcaggtcct
gcaggtcctcctggccctgagggtcaacgtggacctccaggtattggaggagtaaaaggt
gagaagggcatgcctggattccctgggacacctggtgcaccaggactgaaaggagattac
ggttcccctggctttccaggttctccaggaaatccaggacctagtggcccgaaaggagat
cctggaactccaggttctcctggattcccaggatctaaaggacaacctggtcttcctgga
gctaatggcatcccaggagaacgtggtgatactggaacagcaggacctcctggtgaccca
ggttatgctccagaacctatttttttgaagggggagcgtggtccacctggaccacctggt
accccaggcagcagaggcccatcaggccccttgggattacagggtcttccgggttcacct
ggcaaccccggagacccaggtccaatgggacctccaggatttaccggctcaccaggaaag
aagggaaatgcaggaccagctggacaaccaggtcagcgtggttaccccggccctcctggt
ccagaagggattcagggccctccgggtatctcaggatcatcgtctgctgcacacggtttt
ctgatcacacgccacagtcagaccacagacgtgccagcgtgtcctggtgatacaacactc
atctatgatggctactctctactctatgtgcaaggcaacgagagggcgcacggacaggac
ctgggtacggcaggtagttgtctgcgtcgtttcagcacaatgcctttcatgttctgcaac
atcaacaatgtctgcaacttcgcttcccgcaatgactactcctattggctgtccacacca
cagtccatgcccatgaacatggcgcctatcactggagagaggatcaaacctttcatcagt
cggtgctctgtgtgcgaagctccagccatggtgattgctatacacagccagaccattcag
gtgccgtcctgtccagactactgggacatactctggatcggttactccttcatgatgcac
accagtgcaggtgctgagggctcaggtcaggctcttgcctctcccggctcctgtctggag
gagttccgctcgtctccgttcatcgagtgccacggtcgaggcacctgcaattattacagc
aactcctacagcttctggctggccactgtggatgtgaatgaaatgttcagaaagccacag
tcagagacactgaaagctggaaacctggagacccgtgtgagccgctgtattgtgtgtatg
aagaggacgtaa
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