Cyprinus carpio (common carp): 109099366
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Entry
109099366 CDS
T05134
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
ccar04518
Integrin signaling
ccar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109099366
04518 Integrin signaling
109099366
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109099366
09142 Cell motility
04820 Cytoskeleton in muscle cells
109099366
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109099366
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109099366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109099366
NCBI-ProteinID:
XP_042590656
Ensembl:
ENSCCRG00000018040
UniProt:
A0A9Q9WW46
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All DBs
Position
B12:complement(2938121..2964163)
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AA seq
1243 aa
AA seq
DB search
MFSFVDIRLGLLLAAAVLVVRGQGEDDISFGSCTLDGQNYNDKDVWKPEPCQICVCDSGT
VMCDDVICEDTSGCDNPEIPEGECCPICPDDGDIVTEGPVGPVGPVGDPGPPGAPGRDGI
PGENGLPGPPGPPGTPGLGGGSFLSQMAYGSEKSSGPPVPGPPGPPGPRGPPGISGSPGP
AGFPGPPGEPGEPGSPGPMGSRGPPGPSGKNGEDGEAGKAGRPGERGAAGPQGARGFPGT
PGLPGIKGHRGFSGLDGAKGDTGPAGPKGEPGVHGESGIAGVMGARGLPGERGRPGAPGP
SGARGNDGNTGAAGPPGPTGPAGPPGFPGGAGAKGESGPAGGRGSEGPQGARGEPGNPGP
AGAAGPAGAPGADGGPGGKGSPGAAGIAGAPGFPGSRGPAGPPGPSGAPGPKGNNGDPGP
QGSKGDGGPKGEPGPVGPQGLAGPAGEEGKRGARGEPGGAGPVGPPGGRGAPGNRGLPGS
DGAPGPGGAPGERGANGPMGPQGASGESGRPGEPGLPGSKGMTGAPGSPGPDGKAGPSGA
SGQDGRPGPPGPAGSRGAPGVKGEPGAIGPPGVTGARGAPGERGEHGPPGPAGFAGPPGA
NGQPGAKGQTGDSGPKGDAGAPGPTGPVGAAGPQGPAGATGAKGARGGAGPPGATGFPGA
AGRVGPPGPPGAAGPPGPTGGVGKEGQRGARGERGPAGRPGEAGASGPPGPSGEKGSVGP
DGPAGAPGSPGPPGFIGTRGIVGAPGLRGERGPGGLAGPSGEPGKQGPVGPLGERGLPGP
MGPPGLGGAPGEAGREGNPGHDGAPGRDGPPGPKGDRGESGNSGPPGAPGAPGAPGHMGP
SGKNGDRGEAGPAGPAGPAGPAGVRGAQGPAGARGDKGEAGEAGERGMKGHRGFTGMAGV
PGPPGSPGDQGPAGPSGPAGPRGPSGSNGMPGKEGMNGLPGPVGPPGPRGRSGEMGPAGA
PGLPGPPGPPGPPGIGEQFHHMPQVEKGPDPLRGGYRADDASVRDRDTEVDTNLKSLSQK
IEKIRSPEGTQANPVRMCRDVRMSHPDWKSGSYWVDPNQGSPLDAIKVFCNMETGETCLS
PSQNTIPMKNWYTSKNIREKKHVWFGESMPNGFQFQYGSEGSDPEDVNIQLTFMRLMSNE
ASQNITYHCKNSIAYMDQTTGNLKKALLLQGSNDIEIRAEGNSRFTYRVSEDGCTSHTGT
WGKTVIDYKTTKTSRLPIIDIAPMDIGAPDQEFGVEVGPVCFL
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgctgctggccgcggcggtcctcgtggtg
agaggacaaggagaggatgatatctcattcggtagctgtacattggacggtcagaattac
aacgacaaggatgtatggaaacctgagccctgccagatctgcgtctgcgacagcgggaca
gtcatgtgcgacgatgtgatctgcgaggatacatcaggctgtgacaatccagagattccc
gaaggagaatgctgccccatctgccccgacgatggagacattgtgactgaaggtcctgtg
ggtcctgttggtccagttggagatccaggtcctccaggggctcctggcagagacggtatt
cctggagagaacggactccctggacctcctggtcctcctggaacccctggccttggcggc
ggatctttcctctcccagatggcttacggcagtgagaaatccagcggcccccctgtcccc
ggacccccaggccccccgggtccccgtggcccccctggaatttcaggttcacctggcccc
gcgggattccctggacccccaggtgagcctggagagcctggttctcctggcccgatgggt
tctcgcggtccccctggtccttctggaaagaatggagaggatggtgaagcaggcaaagcc
gggcgtcctggagagcgcggagccgccgggccccagggtgctcgtggatttccaggaacc
cctggactccccggcatcaagggacacagaggtttctctggtctagatggagctaaggga
gacactggacctgctggacctaagggagagcccggtgttcatggtgagagcggtattgca
ggagtcatgggtgctcgtggtttgcccggtgagagaggtcggcctggtgctcccggccct
tctggtgcacgcggtaatgatggaaacactggtgctgctggacctcccggacccactggc
cctgctggtcctcctggattccctggtggtgctggtgctaagggagaaagcggccctgct
ggaggtcgtggttcagaaggaccccaaggagcccgtggagagccgggtaaccctggacct
gctggtgctgctggtcctgctggagctcctggtgctgatggtggtcctggtggcaaagga
tctcctggtgctgctggtattgctggcgctcctggtttcccaggatcccgtggacctgct
ggaccccctggcccctctggtgctcctggccccaagggaaacaatggtgatccaggaccc
caaggctctaagggagatggcggtcctaagggagaacccggcccagttggaccccagggt
ctggccggacctgctggtgaagaaggaaagcgaggagctcgtggtgagcctggtggcgct
ggacctgtcggaccccccggaggccgtggtgcccctggcaatcgtggtcttcctggtagt
gatggagctcctggacccgggggggcccctggagagcgtggagccaatggaccgatggga
cctcaaggagccagcggagagtctggtcgcccaggagagccaggattgcctggatccaag
ggtatgactggtgcccctggaagccctggacctgatggcaaagctggaccctctggtgca
tctggacaagacggccgtcctggaccccctggacctgctggatctcgtggtgctcctggt
gtgaagggagagcctggtgctattggacctccaggagtgactggtgctcgtggagcccct
ggagagcgtggagagcatggtcctcctggacctgctggttttgctggacctcctggtgcc
aacggacagcctggtgctaagggacagaccggtgactctggacccaagggtgatgctgga
gctcctggacccactggacccgtcggagccgctggcccacagggacctgctggtgctact
ggagctaagggtgctcgtggtggtgctggacctcctggtgctactggtttccctggtgct
gccggtcgagtcggacctccaggtcctcctggtgctgctggacccccaggcccaaccggt
ggtgttggtaaagaaggacagagaggagcccgtggtgagcgaggccccgcaggtcgccct
ggagaggccggggcctctggacccccaggaccctccggagagaagggtagcgttggcccc
gatggccctgctggcgcccctggttctccaggacctcctggttttattggaactcgtggt
attgtcggtgctcctggactaagaggagagagaggacctggtggtctcgccggaccttct
ggagagccaggtaagcagggacccgtggggcccttaggagagcgggggcttcctggaccc
atgggtcctcctggactgggtggagctcctggtgaagctggtcgtgagggtaaccctgga
catgatggtgctcctggccgtgacggtcctcctggaccaaagggagaccgcggtgagtct
ggcaactccggccctcctggggcccctggtgctcctggagctcctggccacatgggtcca
tcgggcaagaatggagatcgtggagaggctggtcccgctggtcctgccggtcctgccggt
cctgctggtgttcgtggtgctcaaggtccagctggtgctcgaggagataagggtgaggct
ggagaggctggagagcgaggcatgaagggacaccgcggcttcactggaatggctggagtt
cctggacctcctggatcccctggtgaccaaggacccgccggaccatctggccccgctgga
cctcgtggaccttctggctccaacggcatgcctggtaaggagggtatgaatggtttgcct
ggacctgttggacctcctggaccccgaggtcgctctggagaaatgggacctgctggtgct
cctggtcttcccggacccccaggacctcctggccccccaggcatcggcgagcagttccac
cacatgcctcaggtagagaagggtccagatcctctgcgtggaggctacagagccgacgac
gccagcgttcgtgaccgcgacactgaggtggacaccaacctaaaatctctgagccagaag
atcgagaaaatccgcagccccgagggaacccaggccaaccctgtccgcatgtgccgcgac
gtgaggatgagccatccagactggaagagcggttcctactgggtggatcccaaccagggc
tctcctctggatgccatcaaagtcttctgcaacatggagactggggagacctgcctcagc
ccatctcagaacaccattcccatgaagaactggtacaccagcaagaacatcagagagaag
aagcacgtttggtttggagagtccatgcccaatggcttccagttccagtacggcagcgag
ggctctgatccagaggatgttaacatccagctgaccttcatgcgtctgatgtccaacgag
gcttctcagaacatcacctaccactgcaagaacagcatcgcctacatggaccagaccaca
ggcaacctgaagaaggctctgctgctgcagggctccaacgacatcgagatcagagcggag
ggcaacagccgcttcacatacagagtcagcgaggacggctgcacgtcacacactggcaca
tggggcaagacagtcattgactacaagacaacgaaaacatctcgtctgccaatcattgat
atcgctcctatggacattggtgctcctgatcaggaattcggcgtagaagtcggcccagtc
tgcttcttgtaa
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