Cyprinus carpio (common carp): 109099421
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Entry
109099421 CDS
T05134
Symbol
hps5
Name
(RefSeq) LOW QUALITY PROTEIN: Hermansky-Pudlak syndrome 5 protein
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccar04131
]
109099421 (hps5)
Membrane trafficking [BR:
ccar04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
109099421 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_HPS5
TPR_HPS5
WD40_WDHD1_1st
Beta-prop_EML_2
PEP5_VPS11_N
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Vps41
WD40_CDC20-Fz
Beta-prop_IFT140_2nd
Beta-prop_RIG_1st
Beta-prop_THOC3
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
109099421
NCBI-ProteinID:
XP_042608706
Ensembl:
ENSCCRG00000018876
UniProt:
A0A9R0AU85
LinkDB
All DBs
Position
B25:complement(3934262..3951212)
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AA seq
1126 aa
AA seq
DB search
MIPVVPVESCTHVLAEFDCLDPLLSALRLDSGRIRCTCLSVSRKWLALGTSAGGLHLIQR
DGWKQKLILTHKEGSITQVSCCPHDEDFIAVATSQGLVVVWELHLERRGRPERVSVSWEH
RGQTVTSLCWDTAALRVFAGDVGGKVSCVRAGSSKLGKGSAFVIFPIQTITTVDSRVVQL
GYSDGHLVVSSLSRCYLCDTEREKFWRVGNKERDGEFGACFLQQGSAGQRGQALLYCARP
GSRLWEASFAGEVLSTHQFKQLLACPPLPLVSYKNEPHFNPAQTSPQSLAFPRLLQFGDQ
NLLTWTDSAIYIFTPHSGQVLLWTEVKDVVEISVFRNELFCLHGDGRLSHLSLMSPERCV
ERLMKRENWTLATTVCCMFQHAIITSRARKSLPIDRLEQLKAQLNSGSQQQLIGQLEEVI
SKLEPLDSACSSRRSSISSHESFNVLDCGIYRVISRRGSQSDDDASSLANQSMLEEERLK
EFSFTEEEQVENDSQSVCGEADRSDTSLQFLPLPFRSKPPRVALQAVRDSVSSFVKKTTE
KINTLQMNTDLWPRPDFREGVHTEVTATVTPLPEEVEHELNAEQSSSESELQELKAATKK
AISEIQDPMVLLDPVCLSDVLREWAPVLERVLGPEDHTRPTETHEEKPLEEEEIVSSMSC
CVVVQPDIYSANLDEPAATLTEEEDHGESTPCSTAPVRALSSPLANHVELIQLFSPKPLP
TDLQADLSQLACLYLEMGCPGRGGIESVCVFLRRYFFLLDQERVRKMCMLRYREHRKVMK
AYIAGMLEFTQASKVVEVIQKGDLLKSLRSLRELQPWNAPLLLSHLYRLYDKHGEVAVRA
YPQFYPTILPSDIMAMALPSHFLPYLDNLVQSRAEQQRYGFSCSLLHPETLRHNILXKAL
SSHDAPQKDDTLTADGQPRWHSHFFSWGYGRLLSLLIRLPADLASKQKMLEMCRTHGYWM
GYLYLCRELQRRTEAFSAICRLDDMTLLEGDDGIVPQSLDEWVLFLQLSQQISSSIEAPP
TSALPSNPNGSCSDDTNGTSDSSPDLSDDSTDWSIRVSPENIILRLVRVFGPDRALTALQ
ERGIPVDLSSRSTLVCDLLRVAEKRQRALIQTMLERCDRFLWSQHA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgattcctgtggttcctgtggagtcctgcacacatgtcctggcagagtttgactgcctg
gaccccctgctctccgccctgcggctggactcgggacggatcagatgcacatgtctctct
gtgtcaaggaagtggttggctctggggacgtctgccggagggcttcacctcattcagaga
gacggctggaagcagaaactcattctcacacacaaagaaggctcaatcacgcaggtctca
tgctgcccccatgatgaagactttatcgctgtagcaacgagtcagggtttggtggtggtg
tgggagctgcatttagagcggcgtggccgtcctgagcgcgtctctgtgtcctgggagcac
cggggacagacggtaacatccctgtgctgggacaccgcagccctccgagtgtttgccgga
gatgtcggagggaaagtgtcctgcgtccgagctggatcatctaaactcgggaagggctct
gcgtttgtgatcttcccaattcagaccatcaccacagtggattcacgagtggttcagctg
ggctactcggacggacacctggtggtctcgtctctcagccgctgctacctgtgtgacacg
gagagggagaagttctggcgtgtgggtaataaagagcgagatggagagtttggggcatgt
tttctccagcagggttcggcgggtcagcggggtcaggcgctgctgtactgcgcccggccc
ggctcgcgcttatgggaggccagtttcgctggagaggtcctgagcacacaccagtttaaa
cagctgctggcctgcccaccactgcccctcgtctcttacaagaatgagccacatttcaac
ccagcacagacgagtccacagtctctggctttcccaagactcctccagtttggcgatcaa
aacctactcacctggacagattcggccatctacatcttcacccctcacagcggtcaggtt
ctgctgtggacagaggtcaaagatgtggtggagatttcagttttccgtaatgagctattt
tgtctacacggtgacggccgtttgtctcacctgtccctgatgtcacctgagcgctgtgtg
gagcgtctgatgaagagggagaactggacgctcgccaccaccgtctgctgcatgtttcag
cacgccattattacatccagggccaggaagtccctccccattgatcggctggagcaactt
aaggctcagctaaactccggctcccagcagcagctgattggtcagctggaggaagtgatc
agcaaactggagccactggactccgcctgcagcagtcgcagaagcagtatttcctcacac
gagagcttcaacgttctggactgcggcatctaccgtgtcatcagccgaagaggcagccaa
tcagacgatgatgccagctccctcgccaaccaatcgatgcttgaggaggagcggctgaag
gagttcagtttcaccgaggaggagcaggtggagaatgactctcagtctgtgtgtggagag
gccgacaggtcagacaccagcttgcagtttctgccgctgcctttccgctcaaaaccccca
cgagtcgccctgcaggctgttcgagacagtgtctccagctttgtgaaaaagaccaccgag
aagatcaacacgcttcagatgaacacagacctgtggcctcggcctgacttcagggaaggg
gttcatacggaggtcacggccacggtgacccctcttccagaagaagtcgagcatgaattg
aacgctgagcagtccagctcggagtctgagctgcaggagttgaaggccgccacaaagaaa
gccatctctgagatccaggaccccatggttttattggaccctgtctgtctaagcgatgta
cttcgagagtgggctccagttctggagagggtcctgggtccggaggatcacaccagacct
acagaaactcatgaggagaagcctctggaggaggaagagattgtttcatcaatgtcctgc
tgtgtcgtggttcagccagatatctactctgctaacctggatgaacctgctgcaaccctt
actgaagaagaggaccatggagagagcaccccttgttccaccgccccagtcagagcgctg
tcctcacctctggcgaatcatgtcgaactaatacagctgttttcccccaaacccctgccc
actgacctccaggctgacctctcacagctggcctgtctttatctggagatgggctgtccc
ggtagaggaggcatcgaaagcgtgtgtgtgttcctgaggaggtacttcttcctgttggac
caggagagagtgaggaagatgtgtatgctgcgatacagagagcaccgcaaggtgatgaag
gcgtatattgctggcatgctggagttcactcaggccagtaaggtggtggaggtgattcag
aagggcgatctgctgaaatctctgcgcagtctgagagaacttcagccctggaacgcacct
ctgctactctcacacctgtacagactctatgataaacacggagaggtggctgttcgtgcc
tacccgcagttctatcccacaatcctcccctctgacatcatggccatggctttacccagc
cacttcctgccttatctggacaatctggtccaatcacgagccgagcagcagcggtacggc
ttctcttgctctctcctccacccagaaactctccgacacaatattctctaaaaggctcta
tcctcacatgatgccccacaaaaggatgacacactcactgctgacggacagcccaggtgg
cactctcatttcttcagctggggttatgggcgtctgctgtctttgctgattcgtctgcct
gctgatctggcctccaaacagaagatgctggagatgtgcaggactcacgggtattggatg
ggttacctgtacctgtgcagagagctgcagcggcggaccgaggctttcagtgccatctgc
agactggacgacatgacactactagagggggatgatggcattgtacctcagtctcttgat
gagtgggtgttgtttctccagctctcccagcaaatcagttcaagcatcgaagccccgccc
acttcagcccttcccagcaaccccaatggatcctgttcagacgacactaacggcacaagc
gatagttctcccgacctatcagatgattcgactgactggagcattcgcgtcagcccggag
aacatcatcctgcgtctagtgcgggtcttcgggccggaccgggccctgacggccctccag
gagcgcgggataccggtggatctcagttcacgctcaacgctggtctgcgatctgcttcgt
gtggctgagaagcggcaaagagcactgattcagaccatgttggagcgctgtgaccgcttt
ctgtggtctcagcacgcttaa
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