Cyprinus carpio (common carp): 109099627
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Entry
109099627 CDS
T05134
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109099627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109099627
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109099627
mRNA degradation factors
3'-5' decay
Pan complex
109099627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Pkinase
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
109099627
NCBI-ProteinID:
XP_042570288
Ensembl:
ENSCCRG00000027699
ENSCCRG00000048593
UniProt:
A0A9Q9VSB5
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All DBs
Position
A24:15523702..15535938
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AA seq
801 aa
AA seq
DB search
MNSGLPAPAAPLGGVGIPGVKVKFCRYYAKDKTCFYGDECQFLHEDPSMASLSLHGGGTG
AGGGGGSPVSLSLAGGAVAAAGYVLGSSAASGAPANVPKKNDSLGPAGTAMEGQLLSIPG
MEGGALNDASLTNSYFSSTFIGVNGFGGPAESKYSMMQRMTSSSSSPSLLNDGAKSFTHS
THDPVNSPVSSLFSDFGALSISQRRKAPNPTASEFVPKGAPRMASMSQTAVPAFTSPIFP
HPVLSSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPNPANYMMPPSASD
QGGGAHIIQKETVGGTTYFYTDNTPAPLAGMVFPTYHMYPQTAPHVAYMQPKANAPSFFM
ADELRQELINRHLITMAQIDQSENPGVPSEVDSYHSLFPLEPLPPPNRLQKTSNFSYITS
CYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNTVTLREVFTTKAFGDHSL
VFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQHEIPPPRQHAGLLPESLIWAYIVQLS
SALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGMFDVLTFDNSQTNHLALMPQYQQAD
LISLGKVVLALACNSLAGIKRENLQKAMELVSINYSSDLKNLILYLLSEQSRLRSVNDIM
PMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETG
DRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSMLVVTYS
DLKRCFESTFQELLASTNGPL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagctccagctgctccgctcgggggtgtcggaatacccggtgtg
aaagtgaaattctgccgttattatgcgaaagacaagacttgtttttacggagatgaatgc
cagtttctgcacgaggatccgtccatggcgagcctttctctgcacggtggtggtacaggt
gctggcggtggaggaggaagccccgtttctttatctctcgccggaggagcagtggcggcg
gcaggatacgtgctcggaagtagcgcggccagcggcgctccggcaaacgttccaaaaaag
aacgattctctcggtcccgcgggaacagctatggagggacaactattgtccatccctggg
atggaggggggtgctctgaatgatgccagtctgaccaactcgtacttcagcagcaccttt
attggggtcaatgggtttggaggaccagcagagtccaaatattcaatgatgcagaggatg
accagcagtagcagttctccaagtctgctgaacgatggtgccaagagcttcacccacagc
acacatgatccagtaaattccccagtgtcatctctcttcagtgattttggtgctttgagc
atatcacaaaggagaaaggctcctaaccccacagcaagtgagtttgtccctaaaggggcc
ccacggatggcctccatgtctcagacggccgtgccagcattcacctccccaatcttccct
catcctgtcttgagcagctccacagcggctgctcttgcacctggtatgtcactctctgct
gggtcatctcctcttcactcccccaaaatcacccctcacacctccccagccccacggcgg
cgcagtcacacacccaaccccaacccagccaattacatgatgccccccagtgcgtctgat
caaggcggtggagcccacattattcaaaaggagactgtgggtgggacaacctacttctat
accgacaacacccctgcccctttggccggaatggtgtttccaacatatcacatgtatccg
caaacggcacctcatgtggcgtacatgcagccaaaagccaatgcaccatccttctttatg
gctgacgaactccgacaggagctgattaacaggcatttgataacgatggcacagatagat
cagtctgagaaccctggagtgccgtctgaggtagacagttaccacagcctctttccactg
gaaccccttcccccaccaaaccgtcttcagaaaaccagcaacttcagttacatcacttcc
tgttacaaggcagtcaacagcaaagatgacttaccttactgcctcaggaggatacatggc
ttcaggctggtcaacaccaagtgtatgatgctggtagacatgtggaagaagattcagcac
tccaatactgtgaccctccgagaggtcttcaccaccaaagcatttggagaccactcactg
gtattttcctatgacttccatgcgggggcggagaccatgttcagcaggcacttcaacgat
ccggcagcggattcttacttcacaaagagaaagtgggggcagcatgagatccctcctcca
cggcagcatgcggggctcttaccggagtctctgatttgggcctacattgtccagctgagc
tcagcattgcgcaccattcacacggctgggctggcctgcagggtcatggaccctagtaag
atcctcatcactggaaagacacggttacgagtcaactgtgtaggaatgtttgatgtctta
acatttgacaatagtcagaccaaccacctggcgctgatgccccagtaccagcaagcagat
ctcatctccctggggaaggtggtgttggctctggcgtgtaactctctagctggcattaag
agagaaaatctgcagaaggccatggagctggtgtcaatcaactactcatctgacctcaag
aacctcattctgtacctgctctcagaacaaagccgtctgcgcagtgtcaatgacattatg
cccatgattggagcacgattttacacgcaactcgatgcctcgcaaatgagaaacgatgtc
attgaggaggaccttgccaaggaggttcaaaatgggcgattgttccgcctattggcaaag
ctgggaacgatcaacgagagaccagagttccagaaggacccaacgtggtctgagactggt
gaccgttacctgctgaagctcttcagagatcacctgttccaccaggtgactgaggcaggc
acgccctggattgacctcagccacattgtgtcctgcctcaataagttggatgctggagta
ccggagaagatcagtctggtgtcacgggatgagaagagcatgcttgtggtgacttactca
gacctgaagcggtgctttgagagcaccttccaggaactgctggcctccacaaacggtccc
ctgtaa
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