Cyprinus carpio (common carp): 109099834
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Entry
109099834 CDS
T05134
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccar03016
]
109099834 (trub1)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
109099834 (trub1)
Transfer RNA biogenesis [BR:
ccar03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
109099834 (trub1)
Prokaryotic type
109099834 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
109099834
NCBI-ProteinID:
XP_018968871
Ensembl:
ENSCCRG00000009819
UniProt:
A0A9Q9VG23
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All DBs
Position
B12:complement(16643989..16647778)
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AA seq
286 aa
AA seq
DB search
MAVQNSTLSKLQSLNGIFAIYKKQGPTSADVLNTLKKALLREAGIANPNPRKRKKQLLKI
GHGGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYRAVGELGKATDTLDVTGNVVEEKSY
DHITKEAFEEQLKQFTGEIMQVPPLYSALKKDGQRMSVLLKQGQEVEAKPARSVTVYSLS
LQDFSPPCFTIDVECGGGFYVRSLVDDLAKALSSCAHIKELTRTKQGQFTLEEHALKEDR
WTWTDISQALQPCPKPSGQQKNAKKAKSKHMPTSSESEGDNGDQND
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggctgtacagaacagtacgctatccaaattgcagtctttaaatggtatatttgccatt
tataagaaacagggtcccacctccgcggatgtgttaaacacactgaagaaggcgctttta
agagaggcagggattgcaaatcccaatcctcgcaagaggaagaagcaacttttaaaaatt
ggccatggtggcaccctggacagcaatgcttctggtgtacttgtggttggaattggtgaa
ggaacaaagatgctcaccacgatgcttgcaggatcaaagaaatacagagctgttggagag
ttaggcaaagcaactgatacgcttgacgtcacaggaaatgttgttgaagaaaagagttat
gatcacatcacaaaagaggcttttgaggagcagctgaagcagtttacgggtgaaattatg
caggttccacctctatattcagcactgaagaaggatggccagcgcatgtctgtccttctc
aagcaaggtcaagaggttgaggctaaacctgcacgttcagtcacagtgtacagcctctct
ttacaggacttcagcccgccatgtttcaccatagatgttgagtgtggaggtgggttttat
gtcagaagcttggttgatgatcttgcaaaagctctgtcgtcctgtgctcacatcaaggaa
ctcactcggaccaagcagggacagttcaccctggaagagcacgcattgaaggaggatcgc
tggacatggacagatatctcacaggctctgcagccctgcccaaagccatcagggcaacaa
aagaatgccaagaaagctaaatcaaagcatatgcccacctcatctgaatctgagggtgac
aatggagatcaaaatgattaa
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