Cyprinus carpio (common carp): 109099853
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Entry
109099853 CDS
T05134
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6-like isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccar03036
]
109099853
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
109099853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
CHDCT2
DEAD
HDA2-3
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
109099853
NCBI-ProteinID:
XP_042614849
Ensembl:
ENSCCRG00000011605
UniProt:
A0A9Q9Y727
LinkDB
All DBs
Position
A6:complement(29453467..29490540)
Genome browser
AA seq
2941 aa
AA seq
DB search
MSGAGVSRRRHKDQEKMKIQKKDKQMSATHVLKHTPSTAASNASDQNAQTTFPIGHLGKE
QLRIIGGPPNHCMAHPKHSGLREAGPAASSHSLRPLSINSEEDDGGGGTRVKKKRRKKDK
KESEWQKDEESNAKPKRREQKEGKELLPRKSKAVKEQKDHKKREPKAPKEVKKVKKGQDV
KVKTQAKNTATHPPSKRGRKPKEQGAMPPEKKKKGKRKSDAVLEMVESDDTNSLSTLATG
GEESIDPMDNTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGPGRIAAMSSSTLAWQA
EEPPEDEANIIEKILSVRTVKKETSPDEPPEEMEEFYVKYRNFSYLHCKWATLEELEKDP
RISQKIKRFRNKQAQMKHIFTELDEDLFNPDYIEVDRVLEIAITTDTETGEEVTHYLVKW
CSLSYEESTWELQEDVDPVKIREFEELKEIPEIKHVERPLPEQWQKLEKSKEYRNANQLR
EYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTIT
NWEREFRTWTEMNAIVYHGSQISRQMIQQYEMYHRDEQGNIVSGQFKFHGIITTFEMIMA
DCPELKKINWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLN
FLEPSQFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVE
LTNIQKKYYRAILEKNFAFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESF
KKTYSSDAADFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQR
RYTYERIDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWN
PQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLN
GVQQLSKLEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFA
KASFVSSGNRTDISLDDPNFWQKWAKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFED
DELMEFSELDSDSEERPCRTRRLSDRNRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFK
WHLTERDMEVLCRALLVYCVRHYKGDDKIKSFIWDLITPTKDGHNQALQNHSGLSAPVPR
GRKGKKLKNQLSPPELKNADWLVHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVE
VLGEAANQALEGIPASKLEVTLPDIDYIEIPTIWWDAEADKSLLIGVHKHGYERYNAMRA
DPALCFLERVGMPDVTALTVEQSGPETASDAPDSISRSDEIKEENDIKSEELEEKVEIKE
EPMSEETGKNDNTVTGGFIGSLAADLVAEVMEQGRIQWPAGSALTARLRRLITAYQRYTR
REPLRHDFLLHEGIAPVAWQIGEFRHCTTEPDPLFLEWQRRWTRREQADFYRTVSSFGVV
YDPEKKTFDWSQFRALARLERKTDESLERYFHSFVSMCRTACRLPPRKDEGNVDTSLFVE
PITEERAARTLYRIELLRKVREQVLRHLLLGARLQLCRPSLYLPVWWECGKHDRDLLIGV
AKHGLSRTDFYILNDPQLSFLEAHRNYVHKENHRYPVPGLPHHHCCLYDANLGHCQSPQP
PEYHPTPSHHTPTQLVHTHGHHQPTEVVASESESPLGIGTGNREGFLDCPPLDDSLELGS
LQHEGLTSDTLHIKSGKEAFNGFPFNSATGGQNMLNSYGVQGELNGSQGDMADSIAGKLR
SDVLVGEQGSSEETGLMAPSVELDELQTPWESSDHAEASDMFNETDPILGAQTLEPSFLD
APQPEDGREGDETLTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGETSVDQTDLSASLP
EYVSPPPPLGLTDVSLDQTDPISEEQEDKLSDSNITHGVPSPEEGFQDLSPDSPKTMDTQ
DEMPSIASPRENCLEESQKRDYKVPFEDSIGDLKDPCEVALDEPYKKPLTEPQKVPLEES
YDLTCDETLQEPCEGFQQDTADQQLVEEPCKEPSEPIEECNLTNTTLSTDYPMPPSLSSS
PTTLPDTSESLGLEGVPKQELLMDPVVSDVKPEPDSTTQTPHLEQTEVLEEKDKINDEGA
KAPALLGDVDGPRFALPMCEMADSVHEIREPTIAQLLQEKALFSFSEWPKDRVIINRIDS
ICHTILKGKWPSSSQQYESPTSLANTCVPSSAHQRAGFLSTRMPISQSLNFNLSHTVPHL
AKERLVAPSFLPELKRPRRGFEFEAEVLAKPSHLGEKIQVVPHRANALLLNGWQDAAIDL
SKPTELTVGGDSGPVGQMSHTVQSAPHKITGIGSIQGSLGLDMAGILQAGLIHPVTGQIV
NGSLRRDDSMLRRRRGRRRNIETPDLSFIKGRSVNLPEQQSGSESISHPVVSSTSSQSEG
PPATPTTLPTPPPAPSPAPPPASEAMNVSLDRETANKGLMEWLRQNPNYNMELSVFPSQN
ASMLHSFLERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRNTGRRLGGAMAPAIKELSRW
LDANAEYYVAPDWADVVKHSGFLPEGKFTRILSGPVCRDPGPHRRGRRPRSEMPKAPELP
AGMGPLFMNGGFIGSMDLVSLSNLRNVPGIPLTGIMGFPHGFATAVPSGDDAKNGLSMLP
MMLHGMAAVQPSMYSAHMSGMMNQTLSTATASSTTASVTFTNSVTSTSKPADGLDSAPQH
DNASSPMNMENGNREDVKQGEEKKVSASVSTAASTSSSSSSITSTGSHLTFNPFLIPGMS
HSLLYPHMFLPPGSIMALPSMTAADSTGSPKRKRKKVREEGPEEGSSNIGVHIDGVDTKE
FKDEQTPKQKSQEGGMEEGRPDVDLAQVKDPSEDRSTEEKDKNEMGEEHEPSAQGLCDSE
V
NT seq
8826 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagccggcgtgtccagacgcagacacaaagatcaagaaaaaatgaaaatacaa
aagaaggacaagcagatgtctgccacccatgtactaaagcacactccatccactgctgcc
tcgaatgcctctgaccaaaacgcacaaactacatttcccatcggccacttgggcaaagaa
cagttacggatcattggaggcccgcccaatcactgtatggctcacccaaagcactctggg
ttacgggaggcagggcctgcggccagcagtcatagtctccgccctttatcaatcaacagt
gaggaagatgatggagggggcgggaccagggtgaagaagaaacgaaggaaaaaagacaag
aaagagtcagaatggcaaaaagatgaagagagcaacgctaaaccaaagagaagggagcaa
aaggaagggaaggagcttcttcctagaaagtcaaaggcagtgaaggaacaaaaggatcat
aagaagagggagccaaaagccccaaaagaggtcaaaaaagtcaagaaaggtcaagatgtg
aaagtgaaaacacaggccaagaacactgcaacacatccgccctccaaaagagggaggaag
ccaaaagagcagggtgccatgcctccggagaagaagaagaagggaaagaggaaaagtgat
gctgtacttgagatggtggagagtgatgacacaaactctctcagcacgctcgccactggc
ggtgaggaaagcatcgaccccatggataacactaagaggcgatcagggcgtcaagtgaag
cgacggaagtataacgaagatcttgatttcaaggtcgtggatgatgacggggagaccatc
gccgtgttgggcccgggccgaattgctgccatgtcttcctctaccctcgcctggcaggct
gaggaaccccctgaagatgaggctaatatcattgagaaaatactctcagtgcgaacggtc
aagaaagagacatcccccgacgaaccaccagaagagatggaggagttttacgtcaagtac
agaaatttctcctatctgcactgtaaatgggcgaccttggaggaactggagaaggaccca
cgcattagccaaaaaatcaagcgcttcagaaacaagcaagcgcaaatgaagcacattttc
acagagctggatgaagacctgtttaatccagattatattgaagttgatcgggttttagag
attgctatcaccacagatacagaaaccggagaggaagttacacactacctggtgaaatgg
tgctctttgtcatatgaggagagtacttgggagcttcaggaagatgttgatcctgtgaaa
atcagagagtttgaagaactcaaggaaattccagaaatcaagcatgtggaaaggcctctg
cccgaacagtggcaaaaactggagaagtccaaagagtacaggaatgcgaaccagctgcga
gaataccagttagagggaatgaactggctccttttcaactggtacaacaggaaaaactgt
attctggctgatgagatggggctggggaagaccatccagtccatcacgtttctctatgag
attttcctcatgggtctgagaggacccttcctcatcatcgccccgctctccaccatcacc
aactgggagagagagttccgcacatggactgaaatgaacgccatcgtctatcacggcagc
cagatcagtcggcagatgatccagcagtatgagatgtaccaccgagatgaacagggaaac
attgtgtctggccagtttaagtttcatggcatcatcactacatttgaaatgataatggct
gactgtccagagctgaagaagatcaactggcgctgtgtagtgattgacgaagcccatcgc
ctaaaaaaccgcaactgtaaactgctggagggactcaaactcatgaacctggaacataaa
gtccttctcacaggaacccctttgcagaactcggttgaggaactcttcagtctgcttaac
tttcttgaaccctcacagttcccttctgagaccactttcctggaggagtttggagacctg
aagacagaagagcaggtaaagaaactgcaagccattctgaagcccatgatgttgaggaga
ctgaaggatgacgtggagaagaatctggcccctaaagaggagacaatcattgaggtggag
ctcactaatattcagaagaaatactaccgtgccattctggagaaaaactttgccttcctt
gccaagggagcaaaccagcacaacatgcccaacctcatcaacacaatgatggagcttcgc
aagtgctgcaatcacccatacctcattacaggtgctgaagaaaagatccttgagagcttt
aagaaaacctacagttctgatgctgcagattttcagctgcaggcaatgatccaggctgct
ggtaaactagtgcttattgacaagttgctgcccaaactgctggccggaggacataaagtg
ctggtgttttcccagatggtccggtgtctggatatactagaggactacctcattcagagg
cggtatacatacgagcgtattgatgggagagttcgagggaatctacggcaggctgccatc
gatcgcttcagtaaggtggactctgaccgcttcgtgttcctcctctgtacacgagcagga
ggtctgggcatcaacctcaccgccgctgacacctgtattatatttgactcagactggaac
ccgcagaacgacttgcaggctcaagctcgctgccaccgaatcggtcaaagcaaagcagtg
aaagtatatcgccttattacacgaaactcctatgagagggagatgtttgacaaggccagt
ctgaaactgggattggacaaggctgttctgcaggacatcaaccgcaagggcagtctcaat
ggggttcagcagctgtctaagctggaggtggaagatcttctcaggaagggagcgtacggt
gcgcttatggatgaggaagatgaaggctctaaattttgcgaagaggatattgatcagatc
ctgcagcgacgcacacagaccatcacaatccagtctgaggggaagggatcaacttttgcc
aaggctagctttgtgtcttcagggaaccgaacagatatctctctggatgatccaaacttc
tggcagaagtgggccaaaattgctgaactggaaattgactccaaggcagaaaaggagagt
ctggtgatcgacacccctcgcgtaaggaagcagactcgtcactataactcgtttgaggat
gatgaactgatggagttctctgaactggacagtgactcagaggaacgaccctgtcgcacc
agacgtctcagcgatcgcaacagacgctacctccgagcggagtgcttcagagtggagaaa
aatcttctaattttcgggtggggtcgctggaaggatattctcaatcatgggcgttttaaa
tggcacctgacggagcgagacatggaggtgctgtgcagggcacttctggtctactgtgtt
cgccattataagggagacgacaaaattaagagcttcatttgggatctgatcacacccact
aaagacggacacaatcaagcactacaaaaccactcaggtctgtctgctcctgtccctcgg
ggtcgtaaaggcaagaagctgaagaaccagttgagtccacctgagctgaagaatgcagac
tggctggtccactgtaacccagaggttgtgcttcaggatgacagctacaagaaacacctc
aaacaacactgcaacaaggtgctactgagggtgcggatgctgtattatctgaaggtcgaa
gtgctgggggaggctgctaatcaggctcttgaagggatcccagccagtaaactggaggta
accctgcctgatattgactacattgagatccctacaatatggtgggatgctgaagcggat
aaatcgctgcttattggagttcacaaacatgggtatgagcggtataacgcaatgcgtgca
gaccctgctctgtgtttcctggagcgagtgggtatgcctgatgtcactgcgttgacggta
gagcaaagtggaccagaaactgcttcagatgcacctgatagtatcagcaggagtgatgaa
atcaaagaggagaacgatattaagtctgaggaattagaagagaaagtagagatcaaggag
gaacccatgtcagaggaaacaggaaaaaatgataatacagtgacagggggatttatagga
tctctagcagcagaccttgttgcagaagtgatggagcagggacggatacagtggccagca
ggctcagctcttacagcacgtctgcgacgcctcattactgcctatcagcgttatacacgc
cgtgagccgcttcgtcacgatttcctcttacacgagggaattgcacctgtggcttggcaa
ataggagagtttaggcactgcactactgagcctgatccgctctttttggagtggcaacga
aggtggacacgtcgagagcaggctgacttctatcgcacagtgtcctcgtttggagtagtg
tacgacccagagaagaagacctttgactggagccagttccgtgcccttgctcggttagag
aggaagacggacgaaagcttagagagatatttccacagctttgtttcaatgtgtcgaact
gcatgtagactgccacccagaaaagatgaaggtaatgtggatacatcactgtttgtggag
cccattacagaggagcgagctgcccgaacattgtatcgtattgagcttttgagaaaggtc
cgtgagcaagtattgcgccacctgctcctgggggcacgactacagctttgtcgccctagt
ctgtacttgcctgtctggtgggagtgtggcaaacatgaccgtgatcttctcattggggtt
gcaaagcatggcttgagtcgaacagacttctacatcctcaatgacccccaattatccttc
ctggaggcccaccggaactatgttcataaagaaaaccacagatatcctgtcccaggcttg
ccccaccaccattgctgcttgtatgatgccaaccttgggcattgtcagtccccacaacct
ccagagtatcaccccacaccttcacaccacacaccaacacaacttgtccatactcatggg
catcaccagcccacagaagtggtggcatcagagtctgaaagtccactagggataggaaca
ggaaacagggaaggatttttggattgccctccattggatgactctctggagttggggtct
ttacaacatgaaggcttgacatcagacacactacatatcaagtctggtaaagaggccttc
aatggattcccgttcaattctgcaactggtgggcagaatatgctaaattcgtacggggtc
caaggggagctaaatgggtctcaaggagacatggcagactccatagctgggaaacttcgc
agcgatgttctggtgggagagcaagggtcttcggaggagactggcttaatggctccttct
gtggagctagatgaacttcaaactccatgggaaagctcggaccatgctgaagcctctgac
atgttcaacgagactgatcccatcttgggagcgcaaactttggaacccagctttctcgat
gctcctcaaccagaagatggacgtgagggtgatgaaacgctcaccgactgtttgagtatg
cctagttcggactcgcaaagcaaccctgttgaaccactggcaccgagcttcatgttgttc
aaagaccttaatgttggagagacttctgtggatcagacagatctatcagccagtcttcca
gaatatgtttcaccaccaccacctcttggactcacggatgtgagtcttgaccagacagat
cccattagtgaggagcaagaggacaagcttagtgattccaacatcacacatggtgttccc
agtccagaagaaggctttcaagatctttccccagacagtccaaagacaatggatactcaa
gatgagatgccttcaatagcgtctccaagagaaaattgtctcgaggaatcccagaaaagg
gactacaaggtgccatttgaagattccattggggatttgaaagatccttgtgaagtggcc
ttggatgaaccttacaaaaagcctctaactgagccacaaaaagtgcctttagaggagtct
tacgatttgacttgtgacgagaccctgcaggaaccttgtgaagggtttcagcaagacaca
gcggatcaacagttggtggaagaaccctgcaaagaaccatcagagccaatagaagagtgc
aatctaactaacactactctttcaacagattaccctatgccgccttcactctcatcatct
cctactaccttacctgacacctctgaatccctgggccttgaaggagtcccaaaacaagag
ctcctaatggatccagtggtgtcagatgtgaagcctgagccagatagcactacacagacc
cctcaccttgagcagactgaggttttggaagaaaaggacaagataaatgatgaaggtgca
aaggcaccagcattattgggagatgttgatggaccacgctttgcattacccatgtgtgaa
atggcagacagtgtccatgaaataagggaaccaaccattgctcagcttctacaagagaaa
gctctcttctccttctcagaatggcctaaggacagagtgattatcaaccgtattgacagt
atctgccatactatcttaaaggggaagtggccttcctctagtcaacagtatgagtctccc
acttcattggctaacacctgtgtgcccagcagtgcccaccagagggcaggatttctgtct
accagaatgcctatttctcagagccttaactttaacctctcacacacagtaccccactta
gcaaaggagcggttagtggccccatcatttctccctgagctcaaacgtccaagacggggt
tttgaatttgaggcagaagtccttgccaaacctagccatcttggagaaaagatccaggtt
gtgcctcatcgtgctaacgctctcctccttaatggctggcaggatgcagctattgacctc
tccaagccaacagagctaacagttggtggagacagtgggccagttggtcagatgagccac
actgtccagtcagcaccccataaaataactgggataggctccatacaaggctcactggga
ttggatatggctggcattttgcaggctggcctgattcacccagtcacagggcaaattgtc
aacggcagtcttcgtcgtgatgattcaatgttgagacggaggagaggccgaagaagaaat
attgagactcctgatctcagctttataaagggacgaagtgtgaacttgcctgaacagcag
agcgggtcagagagtatcagccaccctgttgtgtcctccacatcctcccagtcagaaggc
cctccagccaccccgactacacttcctactccgcctccagcaccctctccagctcctcct
ccggcctcagaggccatgaatgtgagcttggacagggaaacagccaataaaggcctaatg
gaatggcttagacaaaaccccaactacaacatggagctttctgtttttccatctcagaat
gcaagcatgttgcacagtttcttggagcgtccgaagcagagaaggcatcgctgcaaagac
ccaactaagctcgatgtcaactcactaactggggaggagagagtcccagtagtgcacaga
aatacaggccgcaggcttggaggcgctatggctccagccattaaagagctctcccgatgg
ctggatgcaaatgcagaatactatgtggctcctgattgggcagatgtggtgaagcactct
ggttttctaccggagggcaaattcacacgcatcctctctggaccagtgtgtcgggatccc
ggtccacataggagaggcaggcgaccccgcagcgagatgcccaaagcccccgagctcccc
gctggcatgggtccgctcttcatgaacggtgggttcattggcagcatggatctggttagc
ttatccaatctccgcaatgtccctggcatcccgctaaccggtatcatgggctttcctcac
ggtttcgccactgccgtaccgtcaggagatgatgccaagaatggactcagcatgctgccc
atgatgctccacggcatggcggccgtgcagccatccatgtacagcgctcacatgagtgga
atgatgaatcaaacactgtccactgcaactgcatcctccactacagcaagcgtgactttt
acgaactccgtaacctcaacgtccaagccggcggatggtttggattctgcgcctcagcat
gataacgcaagctctccgatgaacatggagaatgggaatagggaggatgtaaagcaaggg
gaagagaagaaagtgtctgcttcagtgtctacagctgcctccactagcagtagtagtagc
agcatcacaagcaccggcagccatttgacctttaacccttttctaatcccaggaatgtca
catagtctgttgtatcctcatatgttcttgccaccgggcagtataatggcgctgccctcc
atgaccgcagcagacagcacgggcagccccaagaggaagaggaagaaggttagggaggaa
ggaccagaggagggaagcagcaatattggtgtgcatatagatggtgtggatacgaaggag
tttaaagacgaacaaacacccaaacaaaagagccaagagggcggaatggaagaaggcaga
cctgatgtagatttagctcaggtcaaagatccttctgaggatagaagtactgaggaaaag
gacaaaaacgagatgggagaggaacatgagccaagtgctcaaggcttgtgtgacagtgaa
gtctag
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integrated database retrieval system
