Cyprinus carpio (common carp): 109099948
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Entry
109099948 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109099948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109099948
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109099948
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
109099948
NCBI-ProteinID:
XP_042623591
Ensembl:
ENSCCRG00000002460
UniProt:
A0A9Q9YPZ7
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Position
A12:complement(13435779..13443975)
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AA seq
938 aa
AA seq
DB search
MAVQPKQNLSMDSASEQGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAGFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQISYKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDTVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLQAVIKYLELLSDEASFGSFKISTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVSQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSCNLQDCYRVYQAVGQLPSLVLA
LERYSGKHPVLLHAAFISPLNDLVSDFSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSE
LRENMDRLEKAMQAALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYIKSREEYEEAQNAIVKEIITTXAIYSYVDPVQTLNEV
IAQLDAVVSFAVVSHAAPVPYIRPKILEKGSGRLVLKAARHPCVEAQDDVAFIPNDVTFA
KGEEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQ
IKGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAIHHHTPXRLKSFC
LFATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKSGVCDQSFGIHVAELANFPK
HVIANAREKALELEEFQDISGAGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPAESMS
DEAVKEELRKLKAEVIGQNNSFVNEIVSRSAKVKLTSA
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtccatggacagtgcatcggaacaaggatttctg
aatttttatttttctatgcccgagaaaccagacaccacagtgagagtatttgatcgaaac
gattattatacggttcacggaaaagatgcaggttttgcagccaaggaggttttcaagacg
aatggagtcatcaaaaacctgggcacaggaaataagaggttggagagtgtggttctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcaggcagtaccgggtggag
gtttacaagaatgccagtaagagcagcaaagaacatgactggcaaatatcttacaaggcg
tctccgggaaatctgacccagtttgaggagattttatttggcagtggaggagggcctggg
gagggagctgccggtgttgtcggggttcgtcttggcaccggggccgatggacagcgtgtt
gtcggtgttggctatgtggacagcaccctcaggaaactcggtgtgtgtgaattcccagac
aacgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcgtggt
ggcattctgctcacggacaggaagaaatcagagttcacaaccaaagacactgtgcaggat
ctgaatcggctactgaaggcccgtaagggagagactgtgtccagtgctgcacttccagag
atggagaaacagattgcaatgtcttgcttacaagcggtaatcaaatacctggagcttctc
tcagatgaggccagttttggttccttcaagatatccacctttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaggccctgaatctcttccagggttcctctgatgatgct
acaggcacacactctctggcaggcctcttaaacaaatgtcgtaccccacaaggacagcgg
ttggtcagccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gatctggtggagacttttgtggaggactctgagctgaggaagagttgtcaggaggatctt
ctccgccgttttccagacctgaaccgaatggcaaagaagttccagcgtcaaagttgtaat
ttacaagactgttacagggtctatcaagctgtggggcaactgccgagtctggtgctggcg
ttggagagatacagtgggaaacatccggtcctcctgcacgcagcattcatctctcccctc
aacgacctcgtctctgacttctccaaatttcaggagatgattgaaaccacactagacatg
aaccaggttgaacatcatgagttcctggtgaaaccctcatttgatcccacattgagtgag
ctcagggagaacatggatcgtttggagaaagccatgcaggctgccttgaacagtgcggct
cgtgaactggggctggaagcagctaagactgtgaagcttgaatccaatgcacagatcggt
tactttttccgagtcacgtgcaaagaagaaaagagtcttcgcaacaacaagaaattcact
actttagatgttcaaaagaacggagtgcgattcactaacagtaagctgagctctttgaat
gaagagtacattaaaagcagagaagagtatgaagaggcacagaacgccatcgtcaaagag
atcatcaccacataagcaatttacagctatgtggatccagtacagactctgaatgaggtg
atagctcagctggatgcagtggtgagctttgctgtggtgtcccatgctgccccagtgcct
tacataaggcctaaaatactagagaaagggtcagggagactcgttttaaaggcggcaaga
catccctgtgttgaagcccaagatgatgtggctttcattcccaatgatgtcaccttcgca
aagggcgaggagatgtttcatatcatcacaggtccaaatatgggtggtaaatctacatac
atccgtcaagtgggtgtgatcgtgctgatggcacagattggttgttttgtaccatgtgat
gaggcagagctaagtgtggtggactgcgtgctcgctcgagtgggtgcgggggacagccag
atcaaaggagtgtccacatttatggctgagatgctggagactgctgctattcttcgatca
gccacagaggattctctcatcattattgatgaattgggcagaggcacgtccacatacgat
ggctttggtctggcctgggcaatccaccaccacacccccnacagactcaagtccttctgc
ctgtttgccactcacttccatgagctgacggcacttgcacagcaggttcccactgtccgt
aacctccacgtcactgccctgaccacagacagcactctcaccatgctctacaaggtgaaa
agtggcgtttgtgaccagagctttgggattcatgtggcagagcttgccaacttccccaag
catgtgatcgctaatgcacgggagaaggctttggagcttgaggagttccaggatatctca
ggagccggggaggaagctggacccgaagccaagaaacgctgcctggagaaacaggagggg
gagaagattatcgaggctttcctggctaaggttaaatcaatgcctgctgaaagcatgtct
gatgaggctgtcaaagaggagctgcgcaaactcaaggcagaggtcatcggacaaaacaat
agctttgttaatgagatagtgtcacgttctgccaaagtcaaactgacttcagcataa
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