Cyprinus carpio (common carp): 109101157
Help
Entry
109101157 CDS
T05134
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109101157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
cIII
Motif
Other DBs
NCBI-GeneID:
109101157
NCBI-ProteinID:
XP_042624871
UniProt:
A0A9Q9YR50
LinkDB
All DBs
Position
A13:14383907..14404054
Genome browser
AA seq
1523 aa
AA seq
DB search
MDDLRQQRNYSGGSSGERGITETTISTTRITSLPPRGYSASANKGMSSTSGSAGLEKNIL
TPSNGSSFFSSSSLCVSAGGLGSGSGEYLAEETTVSRKTGGVSGSGTGLRVRSSSTDGMR
RTQDSPLFVERKSKTTHSRRYDGSSSDNSSPEIKRKDYGSRGRSQSRETEIRTRLQSASP
STRWTELDDVKKLLKGSRSASVSPTRSSSSSPLPVPRKASTLDTKISTKQVEQYDTTILD
AELASYTWNSSTLPSTVSTGTAYGFHTNTNNMSTGAALVNSTSPSSLSVYGFHNNLAPAS
GVLTSSGVNTQSGYGVQKNYVTSPSSTLGVGTGVSTAGYGVQKNYSSSPSSTLAVSTGVS
TSGTGTRTLNENVSKRYLTLEKENIPVKRETEELILTKDSGKQFTNSTPNGTAGSYSDVS
VKKETITTSYSESAPVKSSSGAYYGSTSVSTKDKATYAEIHKAKVVDDDDCKHGGGLCGC
GPKCCSWWKWLLGFLLSLLLLLGLLFGLIALSEEVKNLKSRVSALEGISSSMTAHTSRLS
SPADDIGIYKAGGSKAAYVNSLDSAVYSDNSELQRNVQQILRAELQSEAMKAFLASSVKA
ERGLPGPKGDTGSPGMKGDNGFPGLPGPPGMAGHPGREGQKGDKGSAGEHGPEGPPGFRG
RDGQPGPRGEPGAPGAGEKGERGIPGPPGSPGLVGPPGPKGASGLQGEQGPQGFRGEPGP
AGPKGERGLSGPPGIKGDHGERGENGLPGVPGAAGRQGPSGEKGAKGSAGPQGPDGEKGQ
RGEPGSIGLPGIRGPPGPSGDPGQPGTPGIQGPPGLPGNPGQPGAKGETGEAGRVINGAG
FSSVAIPGPPGSPGPPGPPGAPGLSGPVGPAGLPGQPGPKGDKGDQGEPGIVVNAGETLV
ATRAERQHGAAHVGVTGPPGPPGPPGPPGRPGDSRPGPPGPPGEPGAQGYGRPGPKGEKG
EPGNFVPNSGTFFAGPPGPPGPPGPKGVTGAQGPRGYQGEPGQPGLPGSPGRVISEYGVA
QGPPGPPGPPGPPGQDGRKGDPGVPGTSAFQGESRVSGAVAVGPQGRTGPPGPPGPPGPP
GHSGGSHSAADYRRYIMEYMQSDSMRQHLSGIQGPPGPPGLSVSVEDVASRVIAYIQRSG
ISGNSISQGPQGPPGPPGPPGSISADYIISLLQREDVRRYVIGPPGPPGSPGISASTFNA
QEVANYAIRMMNEQGMTGRSGPPGPPGPPGQPGASYSDITALLQRSGFSGSVGRPGPPGP
QGIQGPPGLPGTPGGSSAVTGYKLEEIQLYLQKSGFRGPPGLPGPPGPQGPPGDTSGLVS
YSGSSAREQIRAELQDYLNSDTMRRYVHGPPGPPGLPGQKGERGEPGHSYHNARSQHRYG
SEISEPLDYSNVALKVTDYIKNQGILQDLTEGYWRTQAGRIQGPAGPPGPPGPPGYSRVI
GSYGNVTADLMDFFRTYGTIPGPPGRQGPKGDRGYPGPKGEKGEIGSSGIPGLPGQRGPE
GPRGEKGEKGDFQTGRWIRTNGV
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaagacagcagagaaactattcaggaggaagttcaggagagagaggtatc
acagaaacaacgatttctactactagaattacatctttacctccacgaggctacagtgca
tccgccaacaagggcatgtcaagcacctctgggtctgctggcctggagaagaacattttg
actccgagcaacggcagttcttttttctcatcctcatctttgtgtgtgagtgcaggtggg
ttaggctctggatcaggggaatatctggcagaggagacaactgtgagcaggaagacaggt
ggtgtctctggatcgggaacagggttgagggtaagatccagctctactgatggcatgaga
agaacacaagactcccctctgtttgtggagaggaaaagcaaaactactcattcacgtcgt
tatgatggaagttcaagtgacaactcatccccagaaataaaaagaaaagactatggttca
agaggaaggagtcaaagcagggagacggaaatcaggaccagactacagagtgcatctccc
tccactagatggacagagctggatgatgtgaagaagctgttgaagggatcacgttcggcc
agcgtcagccccacacgatcttcctcctcctcccctctccctgtacctcgcaaggccagc
accttagacaccaagatctccaccaagcaagtcgagcaatatgacaccactattcttgac
gctgagctggcctcatacacatggaacagctccaccctgccctctacagtctccactggt
actgcttacggcttccacaccaacaccaacaacatgtcaacgggagctgctcttgttaac
agcacatcaccatcctccttatcagtgtatggcttccacaacaatttagctcctgccagt
ggagtcctaacctccagtggagttaacacacaatcaggatatggtgtccagaagaattat
gtgacaagtcccagcagcacacttggtgttggcacaggcgtctccactgcaggatatgga
gtgcagaagaattattcctcaagtcccagcagcacacttgctgttagcacaggcgtctcc
acttcaggaactggtacaaggacccttaatgaaaatgtgtcaaagagatacctgacgctg
gagaaagagaacattccagtgaagagagaaaccgaagaacttatcctgaccaaagacagt
ggaaagcagtttaccaacagcacccccaatgggacagcagggtcatattcagatgtttca
gtgaagaaagaaactataacgaccagctattctgaaagtgctcctgtgaagtctagctct
ggtgcatattatgggtctacatcagtgtcaacaaaagataaggctacatatgcagagatc
cacaaggctaaggttgttgatgacgatgactgtaagcatggagggggtctttgtggatgt
gggccaaaatgctgttcctggtggaagtggctgcttgggtttttgctcagtctcctgctg
ctcctcggccttctgtttggactcattgctttatctgaggaggtaaagaatctaaagtct
cgtgtcagcgcccttgagggaatatcctcctccatgacagcccacacaagtcgtctgtcc
tctcctgctgatgacattggcatatataaagcaggtggaagtaaagcagcatatgttaat
tcactggattctgcagtttattcagacaattctgaactgcagagaaatgtacagcaaata
ctgagagcagagctgcagtctgaagccatgaaagccttccttgcttcttcagttaaagct
gaaagaggacttccagggcctaaaggtgacactggatctccaggaatgaagggtgataac
ggttttccaggtctaccaggtcctccaggaatggcaggacatccaggaagagaagggcaa
aaaggagacaaaggaagtgcaggtgaacatggtccagaaggtccaccgggtttcagggga
agagatggtcagcctggaccccgtggagagccaggagccccaggagccggagagaagggt
gaaaggggtattcctggtcctcctggctctcctggtcttgttggtccacctgggcctaaa
ggtgctagtggtttacaaggtgaacaaggccctcaaggctttagaggtgaacctggccct
gccgggccaaaaggtgaaagaggtctctctggtccacctggaattaaaggtgatcatggt
gaaagaggagaaaatggattgccaggtgttcctggtgctgcaggacgacaagggccatct
ggtgagaaaggagctaaaggatcagcagggcctcaaggacctgatggtgaaaagggccaa
agaggtgagccaggctcaattggtttaccaggaattagaggaccaccagggccatctggc
gatcctgggcaaccaggaactccagggattcaaggacctccaggcctacctggcaatcct
ggtcagcctggagctaaaggtgagactggtgaggctggaagagttatcaatggagcaggt
tttagctcagtggcaatcccaggaccacctgggagccctggtcctcctggcccacctggc
gctccaggactctcaggtcctgttggccctgctggacttcctggtcagcctggtcctaaa
ggtgataagggagatcaaggagaaccgggtattgtagtaaatgctggtgagactttggtt
gcaacgcgagcagaaagacagcatggtgctgcacatgttggtgttactggaccacctggg
cctcctggtcccccagggccccctggacgtccaggcgattctagaccaggtccaccagga
ccacctggtgaaccgggtgcacaaggatatggaagacctggtcctaaaggagagaaggga
gaaccaggaaactttgtgcctaattcaggaacattttttgcgggaccacctgggccacca
ggacccccagggcctaagggagtgacaggtgcccaaggtccaagaggataccaaggggaa
ccaggtcaacctggccttccaggaagtcccggtagagttatctctgagtacggtgtggct
caaggtccaccaggtcccccaggacctcctggaccacccggacaagatggccgtaaaggg
gatcctggagtaccaggtacatcagcgttccaaggagaatcaagagtatcaggagcagtt
gcagtcgggccacaagggcggactggtcctccaggacctcctggtccacccggtcctcca
ggtcattctggcggatcccattctgctgcagactatcgtcgttacatcatggagtatatg
cagagtgacagcatgaggcagcatttgtctggtattcagggcccacctggtccacctggg
ctttcagtgtctgtagaggatgtggcatctcgggttatcgcttacattcagcgctctgga
attagtggtaacagtattagccaaggtcctcaaggacctccaggacctcctggcccacct
ggaagtataagtgctgactacatcatttcccttttacagagagaagatgtgaggcgttat
gtgattggccctccaggaccaccgggttcacctgggattagtgctagtacctttaatgca
caggaagtggcaaactatgccatcagaatgatgaatgagcagggaatgacaggcagaagt
ggaccaccaggccctcccggcccacctggccagccaggtgcttcctacagtgacataacc
gctctgcttcagaggtcagggtttagtggaagcgttggacgtcctgggccccctggtcct
caaggaatacagggaccccctggtctacctggcaccccaggaggctcctctgcagtcaca
ggttacaaactagaggaaatccagctctacctacagaaatctggttttaggggacctcca
ggcctacctggtccaccaggaccccagggtcctccaggagacactagtggccttgtatca
tattcaggatcttctgcacgagaacagatccgtgctgagctgcaggactacctaaacagt
gacactatgaggcgctacgttcacggtccccctgggccccccggactgcctggtcagaag
ggtgaacgtggtgaacctggacacagttatcacaatgccagaagccaacaccgctatggc
tctgagatcagtgaaccattggactattccaatgtcgcactcaaagtgactgattacatt
aagaatcagggtatactgcaggacctgacagagggatactggagaacacaagcaggaagg
atccaaggacccgctgggcctcctggtcctcctgggccacccgggtacagccgtgtgatt
ggttcctacggaaatgtgacggctgatttaatggacttctttagaacatatgggaccatc
ccagggcctcctggcaggcaaggacccaaaggagacagaggataccctggacctaaagga
gaaaaaggggaaatcgggagctcagggatacccggccttccgggacaaagaggaccagag
ggaccaaggggagaaaagggtgaaaaaggtgatttccagactggtagatggattcggacc
aatggtgtgtaa
DBGET
integrated database retrieval system
