Cyprinus carpio (common carp): 109102665
Help
Entry
109102665 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109102665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109102665
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109102665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
109102665
NCBI-ProteinID:
XP_042592072
UniProt:
A0A9R0AB13
LinkDB
All DBs
Position
B13:28705397..28717268
Genome browser
AA seq
1319 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKARSNASPVEADAASRSNTSPKEEAKVTSKKTPPKPVKSQT
KAEHAKLFGEKAVSAKESREPSSVFSAGALVWAKMEGHPWWPCMIVPQPLTGQQMRGRGR
EQRLHVHFFDEPPTRGWVNTKYIREYQGSDSADAKSGGVFFSGKPVIRKAMELADVAMKD
SPEQRLKMSVCMDPSGDEEEDDEDMEVDKSTLSDAEMSEEEVKEKAKPSRRSSRAAAEKG
QKPKRRRIVVASDSDDSGEEFKPDQAGGSSDEDDEEGVSSGAEEEEESEPEKEPDSPVKP
VKRKRPSEKPAKSKSKPDPPKRAPAAVSSVASDTKSRLSAFSAPDNFESQSGGANGTDGG
ATVWDHEKLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMF
DTVLFYKVGKFYELYHMDAVIGVNELGLTFMRGSWAHSGFPEIGFGRFSDVLVQKGYKVA
RVEQTETPEMMEARCKTLARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETLSKYLLS
VKEKSEEDSAGHGHIYGVCFVDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVLYEKGN
PSAETLKIFKAILSSTLQEGLNAGSQFWDAQKTLKVLAEEDYFNESKADEEKASVLPSTL
KAMTSECDALSLTPKTGYELALSAFGGCMFYLKKCLVDKELLSMGNFEEYVPVDVEMEQA
GGASCFFAQTRQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWLC
APLCNPSSIGDRLDAVEDLMGASSQATEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPD
LRAILYEEVVYSKRKIADSALAALEGFKVMREIVVDHRSPSAEGFKSKLLYRVLSSDCSS
RRKTKRWAFPDLSSRAPRTLVKRCFDHQKARTTGVITPKAGFDPEYDQALNGIKDCERGL
QEYLDRQGRSRLGLATELGRQTRRRAAEGLHEKDSFYNFDQELQRLADKRLRAWLCLSGD
GPMARPEIVLPGDGSQSRPFLDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGGEDDDDDDD
DGKALAPCVLVTGPNMGGKSTLMRQCGLVVIVAQLGCYVPAESLRLTPVDRVFTRLGASD
RIMSGESTFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICC
RTLFSTHYHSLVEEHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFN
AARLANLPEEVIQSGHKKAREFERSTVALRIFKKLCSFSEHPSADREQFTTLVQMIGSL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctctttttaatttcttcacgaagtcgccgcctctcgcggtgaag
gccagatctaacgcgtctccagtggaggcagatgcagcgagcagatccaacacctcaccc
aaagaagaagccaaagtcaccagcaagaaaactccaccaaaacccgtcaaatctcaaact
aaagctgaacatgcgaaactattcggagagaaagcagtcagtgcaaaagagagcagagaa
ccgtcatccgtatttagcgctggcgctctggtttgggccaagatggaaggccatccctgg
tggccctgtatgattgttcctcagcccctcaccggacagcagatgaggggccgtggacga
gagcaaagactccacgttcacttcttcgacgaaccaccaacccgaggatgggttaacaca
aaatacatacgagagtatcaaggctctgatagcgcagatgccaaatccggcggcgtgttc
ttcagcggtaagcctgtgatccgtaaagccatggagctggcggacgttgcgatgaaggac
agtcctgagcagagactgaagatgtccgtgtgcatggatccttcaggtgacgaagaggag
gatgacgaagatatggaggttgataaatcaaccttatcagatgcagaaatgtctgaggaa
gaggttaaagaaaaggcgaagcccagtcgacgttcgtctcgtgctgcagctgaaaaaggt
caaaagccgaagcgtcgccgaatcgtggtggcgtctgacagcgatgactccggtgaagag
ttcaaacctgatcaggcgggaggaagcagtgatgaggacgacgaggagggagtgagcagc
ggggctgaggaggaagaagaaagcgagccggagaaagaaccagacagccctgtgaaaccg
gtgaagcgcaaacgtccttcagaaaagcctgctaagtcaaagagcaaaccagatccacca
aaacgagcacctgcagctgtttcatcagtggcatcggacaccaaatctcgactttctgct
ttctctgcaccggacaacttcgaaagtcagagcggcggtgcaaacgggacggatggagga
gcaactgtgtgggaccacgagaagctcgagtggctgcaagacggcaagaggaaggatgca
cagcgcaaacgtcagtctgacgaaaactacgaccctacgactctatatgtacccgaagat
ttccttaacaggacgacgcctgggatgcgccgctggtggcagctgaagtctgagatgttc
gataccgttctgttctacaaagtcggtaagttctacgagctctaccacatggacgctgtg
atcggcgtcaacgaactcggtcttaccttcatgaggggtagttgggcacattctggcttc
cccgaaatcggctttggacgcttctcagacgtgctcgtgcaaaagggctacaaagtggct
cgagtggaacagaccgagacccctgagatgatggaagcacgatgtaagacgttggcgcgt
cccactaaattcgaccgcgtcgtcaagcgagaggtttgccgaatcatcacgcgagggact
cagacgtacagtgtgctcgacggcgccccttctgaaactctaagcaagtatctcttgagc
gttaaagagaagagcgaggaggacagcgcgggacacggacacatctacggggtctgtttc
gtcgacacctcggtggggcgcttccatatcggtcaattccaggatgaccggcattgttcc
cgtttgcgtactctggtggcacactattctccagcccaggtgctttacgagaagggcaac
ccgtcagccgagacattgaaaatctttaaagccatcttgtcgtcaactctacaagaaggc
ctcaatgctggttcgcagttttgggatgcgcagaagaccctcaaggtcctcgcagaggaa
gactacttcaacgaaagcaaagccgacgaagaaaaggcatcagtgttgccttcgactcta
aaagcaatgacgtcagaatgcgatgctttaagtctcactccaaaaacgggttatgaactc
gctctttctgcatttggcggatgcatgttctacttgaagaaatgtctagtggataaggag
cttctctcaatgggaaacttcgaggagtatgttcctgtcgacgtggagatggagcaggct
ggaggagcgtcgtgtttctttgcccagactcgtcaacgaatggttttggatggagtgacc
cttgctaaccttgagatccttcagaacagctcaactggaggtcctgagggaaccctactt
gagcgactggacacgtgttgcactccctttggcaaacgcttgctaaagcaatggctctgc
gcccctctttgcaatccatcctccattggagatcgcctagatgccgtggaggacctgatg
ggcgcatcatcccaagcgaccgaagtcacagacctgctaaaaaagcttccggatctcgaa
agactgcttagcaagatccacagcatgggtactcctttgaaaggacaggaccatccggac
ctccgagccattctgtacgaagaagtcgtctacagcaaacgcaagatcgccgactccgct
ctcgccgcgctcgagggctttaaagttatgagagaaatcgtggtcgatcataggagcccg
tctgcggaaggcttcaaatctaaactgctgtatagggtgctgtcaagtgattgctcctca
agacggaaaacgaagagatgggctttcccagacctttcgtccagagctccaagaacgtta
gtcaaacgttgtttcgaccatcagaaggctcgcaccacaggcgtcatcacgccaaaggcc
ggcttcgatccagaatacgaccaggccttaaatggaataaaagactgtgagagaggcctg
caggaatacctggaccgacagggaagaagccgactgggcctagctacagagctgggaaga
caaacgagacgcagagctgctgaaggactgcatgagaaggactctttctacaatttcgac
caagaattgcaaagactggcagacaagcggttgagggcatggctgtgcttgagcggcgac
gggcccatggccagaccagagatcgtcctcccgggtgacgggtctcagtcacgccccttc
ctggatctcagagggtcccggcacccttgcgtcaccaagaccttcttcggtgatgacttc
atccccaatgacatcttcatcggctgccctggtggtgaagatgatgatgatgatgatgat
gatggtaaagcacttgccccgtgtgtattggtcaccgggccaaacatgggaggcaagtcc
accctaatgagacagtgtggtctggtggtgattgtggcccagctgggctgctatgtacct
gctgagagtctgcgcctcactcctgtggaccgagtcttcactcgtcttggcgcctctgat
cgtataatgtcaggtgaaagtacattctttgtggagctgagcgagacggccagcatcctg
ctgcacgccaccaaccactccctcgtcctgctggatgaactgggcagaggtacggccacg
tatgacggcacagccattgccagcgctgtggtgaaggagctgtcagagaagatctgctgc
cggaccctgttctccactcattaccactcactggtggaggagcacgtccaggaccccgcc
gtcagactcggacacatggcctgtatggtggagaatgagtgtgaggaccccagtcaggag
accatcaccttcctgtacaagttcatcagaggcgcgtgtcccaagagttacggcttcaac
gcggctcgcctggcgaacctcccggaggaagtcatccagtccggccataagaaggcccgc
gagtttgagaggagcaccgtggctctccggatattcaagaagttgtgctcattctccgaa
caccccagcgctgaccgcgagcagttcacaaccctggttcagatgatcggcagcctgtga
DBGET
integrated database retrieval system
