Cyprinus carpio (common carp): 109102809
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Entry
109102809 CDS
T05134
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109102809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109102809
Enzymes [BR:
ccar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109102809
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109102809
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109102809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_14
LRR_4
LRR_8
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
109102809
NCBI-ProteinID:
XP_042594090
Ensembl:
ENSCCRG00000002191
UniProt:
A0A8C1QBE7
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All DBs
Position
B14:13442010..13449179
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AA seq
558 aa
AA seq
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MPKEKYDPPDSRRMYTIMSSEEANSAKKSIWDGLEITGNVRSLSSGLWSLTHLTALHLSD
NSLSRIPPEIAKLNNLVFLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLTQEIMSLYKEPDGTRRLLSYLLDNLNGAIKRIPTEPPPSRSWIVLQEP
DRTRPTALLTVMCYNVLCDKYATRQLYGYCPSWALNWSYRKKSIMQEILSCNADIISLQE
VETEQYYNYFLVELSKQGYDGFFSPKSRARTMSESDRKHVDGCAVFYKTEKFSMVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELKKELMELSSGKSIHAMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKLSSVSGETNSIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYIDSLTNFNCNGKNGTSNGTITHGFKLKSAYENVLMPY
TNYTFDFRGVIDYIFYSRPQLNVLGVLGPLDTNWLLENNIIGCPHPHIPSDHFSLFAQLE
LVLPYPPLLNGVHLAGHR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagagaaatatgacccgcctgattccaggcggatgtacactatcatgtccagt
gaggaggcaaacagtgcgaaaaaatccatctgggatggacttgaaataactggtaatgta
cggagtctcagctcgggcctttggtcgctcacgcacctcactgctctgcacctcagtgac
aactccctgtcacgcatcccacctgaaattgccaagctgaacaaccttgtgttcttggac
ctgtcgtccaataagatcaggagcctgccagcagagcttggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgcctttcgaattggggaaattgttt
cagttacaaacactggggttgaaaggcaatccactcactcaagaaattatgagcctctac
aaggagccagatggtacccggcgactgctaagctaccttttggacaatcttaacggtgct
atcaagcgcatcccaacagagccacctccgtccaggtcctggattgtgctgcaggagcct
gatagaacaagacccacagccctgttaactgtaatgtgctacaatgtgttgtgtgataag
tacgccacacgtcagctctacggctactgcccatcctgggcccttaactggagctacagg
aaaaagtccattatgcaggagatcctcagctgcaatgcggatattatcagcttacaggaa
gtggagacagagcagtattacaactacttccttgtggagctgagtaaacagggatatgat
ggatttttcagcccaaaatcccgggccagaaccatgtctgaatcggacaggaaacatgta
gatggatgtgcagtattctacaagactgaaaagttcagcatggtgcagaaacacacagta
gagtttaaccagctggctatggccaattcagagggctcagaggctatgttgaatcgggtc
atgaccaaggacaacattggggtggctgtgttgctggagcttaagaaggagttaatggag
ttgtcatcaggtaagtctatccatgctatggagaagcagctcctactagtggctaatgct
cacatgcactgggacccagaatattctgacgtgaagctggtacagaccatgatgttcctg
tcagaggtgaagaatatcatagacaaagcctcccgcagtctgaagctctcctcggtgtca
ggagaaaccaacagcatccctttggtgctttgtgctgacctcaactcacttcctgactca
ggtgtagtggagtacctgagcacaggtggggtggattgcacacacaaagacttcaaggag
ctgcgctacattgacagcctgaccaacttcaattgcaacggcaaaaatggcacatctaac
gggacgatcacgcatggtttcaagctaaagagtgcctacgagaacgttctcatgccttac
accaattacacttttgacttcagaggtgtcattgattacatcttctactccaggccacaa
ctgaacgtgctgggcgtcctcgggcctttggacacaaactggctccttgagaacaatatc
attggttgcccacaccctcacatcccctctgatcacttctccctgtttgcacaactggag
ctggtcctgccttatcctccccttctcaatggagtccacttagctggacacagatag
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