Cyprinus carpio (common carp): 109103535
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Entry
109103535 CDS
T05134
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109103535 (ddx1)
03016 Transfer RNA biogenesis [BR:
ccar03016
]
109103535 (ddx1)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109103535 (ddx1)
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109103535 (ddx1)
Transfer RNA biogenesis [BR:
ccar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109103535 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
DEAD
DUF5766
ResIII
DUF4882
T4SS_TraI
Motif
Other DBs
NCBI-GeneID:
109103535
NCBI-ProteinID:
XP_042633843
Ensembl:
ENSCCRG00000027771
UniProt:
A0A9Q9Z879
LinkDB
All DBs
Position
A20:17847890..17856086
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRSAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKAVTKGKYYYEVTCSDQGLCRVGWSVYWACPLLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDPDKGQVSFSKNGNDLGLAFEIPPQLKNQAFFASCVLKNAELKF
NFGDEPFKNQPKDGYVALSQASDGHVVKSSQTGSAKVSQVKSSSNAPRALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSILESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDRIWEKLGKNHIRTDEVHAKDDTRPGAN
TSEMWSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNMEQYFIKQGGGPDKKGHPF
SCVCLHGDRKPNERKYNLEQFKKQEVKFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKSCYNTRLKENGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRTAGGGFYKGHVDILAPTVRELANLER
EAQTSFLHLSYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtttggcgaaatgggagtgatgcctgaaattgcacaggcggtggaagaaatg
gactggcttttgccaacagacattcaggccgaatctatcccactgattctgggcggagga
gacgtgctcatggctgctgagactgggagcggaaaaacaggagccttcagtattccagtc
atccaaatagtctatgagacccttaaagaccagcaggaggggaagaagggacgcagtgct
gtaaagacaggaggagcagttttcaataaatggcagatgaacccctatgacagaagtcca
gcatttgctattggtccagatggcctgtgctgtcagagcagagagttcaaagagtggcat
ggctgtcgttccaccaaagcggtcacaaaagggaagtattattatgaagtaacctgtagt
gatcaagggctgtgcagggtgggctggtctgtttactgggcatgtcctctcttaggaacg
gacaaatatggatttggcttcgggggaactggaaagaaatctcacaataagcagtttgat
agttatggagaggagttcacgatgcacgacaccatcggatgctacatagatccagataaa
ggccaagtgtcattctccaaaaatggtaacgatctgggtctggcttttgagatccctcca
cagctgaaaaaccaggccttctttgcttcctgtgtgctgaagaatgctgaactgaaattc
aactttggtgatgaacctttcaaaaaccaacctaaagatggatatgtggccctgagccag
gcttcagatggtcatgtggtcaaatctagccagacaggcagtgctaaagtgagtcaggtc
aaatccagttcgaacgcccccagagctctcatcatcgagccgtctaaagagctagctgaa
caaaccctcaataatgtcaaccagttcaagaaatatgttgataaccccaaactgagggat
cttctgatcatcggaggagtggctgctaaagagcagctctccattttagaaagcggagtt
gatattgtggttgggacccctggcagactggatgacctcatatccacaggaaagctggat
ctttcccaagtccgcttcctggtgctggatgagtgtgatggactcctcacagctggctac
actgacttcatcatgaggatctacaaccagatcccacaggttacttcagatggcaaaaga
ctgcaggtgatagtttgctctgctacactgcactcgtttgatgtgaagaagctctcggag
aagatcatgcattttcccacatgggtggatctgaagggagaagattctgtaccagaaacg
gtccatcacgtggtggtgccagtcaacccaaaaaaagaccgaatttgggagaaactgggg
aaaaaccacattcggactgatgaagttcatgccaaggatgacacacgacctggagccaac
acttcagaaatgtggtcagaggccattaagattctgaagggagagtatgcgatcagagcc
attaaggagcataagatggatcaggccatcatcttttgcaggacaaagatcgactgcgat
aatatggagcagtacttcatcaaacagggaggaggtccagacaagaaaggacacccgttc
tcttgtgtctgtcttcacggtgacaggaaaccaaatgagcgcaaatataacttggagcaa
ttcaagaaacaggaagtgaagtttctgatttgcacagatgtggctgctagaggaattgat
attcgtggtgttccttatgtgataaatgtaactctaccagacgagaagcagaactatgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatctctggtcgct
atggagaaagagaaggtgtggtaccatgtttgtgccagcagaggaaaaagctgctataac
accagactcaaagagaatggaggatgtactatttggtacaacgagaaagagttgttgtca
gaaatcgaggaacatctgaaatgcaccattactcagtgtgaacctgacatcaaagtacct
gtggatgaatttgatggcaaagtgacttatgggcagcgcaggactgcggggggtggtttt
tataagggccatgtggatatactggccccaactgtacgggaactagccaacctggagaga
gaagcacaaacgtccttccttcatctcagctatctacccaaccagctctttaaagccttc
tag
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