KEGG   Cyprinus carpio (common carp): 109105777
Entry
109105777         CDS       T05134                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109105777 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109105777 (rae1)
   03036 Chromosome and associated proteins [BR:ccar03036]
    109105777 (rae1)
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109105777 (rae1)
Chromosome and associated proteins [BR:ccar03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    109105777 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_SPT8 ExoI_SH3 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 109105777
NCBI-ProteinID: XP_042614030
Ensembl: ENSCCRG00000023152
UniProt: A0A8C1JGM7
LinkDB
Position
A6:12196437..12209964
AA seq 369 aa
MSLFGTNTGFGSGGTGVFGNTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQT
IQIAQHEGPIRTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttattcgggacgaacacgggctttgggtccgggggaacaggtgtatttggcaac
accaccacagacagtcataatccaatgaaggacgttgaagtaacatcgccacccgatgac
agcataagctgcttggcattcagtcctcctacaatgcctggaaactttctcatcggaggc
tcgtgggccaatgacgtgcggtgctgggaggttcaagataatgggcagactgtccctaaa
gcccagcagatgcacacaggcccagtgctggatgtgtgctggagtgatgatggcagtaaa
gtctttacagcctcctgtgacaaaactgccaagatgtgggatctgaacagcaatcagacc
attcagatagcacaacatgaaggcccaatcaggacaattcactggattaaagcaccaaac
tacagctgtgttatgactggcagctgggacaaaacactgaagttttgggatacacgttcc
ccaaatcccatgatgtctctgcagatgccagagaggtgttactgtgcagatgtggtatat
cctatggctgttgtagccactgcagaacgtggtctcattgtttaccagttggaaaatcag
ccttcagagtttcgacgaatagagtcacctctgaagcatcagcaccgctgtgtggctatc
tttaaggacaagcagagtaaacctactggttttgcactgggcagtatcgagggacgagtt
gccattcattacataaacccacctaacccagccaaggacaatttcacctttaagtgccac
aggtccaatggaacaaatactgccacaccccaagatatttatgctgtgaatgctatctcc
tttcaccctgtccatggcactctggcgacagtaggatctgatgggcgcttcagtttctgg
gataaagatgcccgcactaagctgaagacctctgaacaattagatcaaccaataacagct
tgttgtttcaataacaatgggaacatatttgcctatgcttccagctatgactggtctaag
ggtcatgaatattacaatccccagaaaaagaattacatcttcttgaggaatgcggctgag
gaactgaagcctcggaacaagaaatggtga

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