Cyprinus carpio (common carp): 109105778
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Entry
109105778 CDS
T05134
Name
(RefSeq) mRNA export factor isoform X1
KO
K14298
mRNA export factor
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109105778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109105778
03036 Chromosome and associated proteins [BR:
ccar03036
]
109105778
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109105778
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109105778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_EML_2
Beta-prop_WDR3_1st
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_Gbeta
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_ACSF4
Beta-prop_Nup120_160
Beta-prop_SPT8
WDR90_beta-prop_4th
ExoI_SH3
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
109105778
NCBI-ProteinID:
XP_018974594
Ensembl:
ENSCCRG00000023205
UniProt:
A0A8C2DQB3
LinkDB
All DBs
Position
B6:13323309..13339282
Genome browser
AA seq
369 aa
AA seq
DB search
MSLFGTNTGFGSGGTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQT
IQIAQHEGPIRTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagtttattcgggacgaacacgggctttgggtctgggggaacaggtgtatttggcagc
accaccacagacagtcataatccaatgaaggatgttgaagtaacctcgccacccgatgac
agcataagctgcttggcgttcagtccccctacgatgcctgggaactttctcatcggaggc
tcgtgggccaatgacgtacggtgctgggaggttcaagataatggtcagactgtccctaaa
gcccagcagatgcacacaggcccagtgctggatgtgtgctggagtgatgatggcagtaaa
gtctttacagcctcctgtgacaaaactgccaagatgtgggatctgaacagcaatcagacc
attcagatagcacaacatgaaggcccaatcaggacaattcactggattaaagcaccaaac
tacagctgtgttatgactggcagctgggacaaaacactgaagttttgggatacacgttcc
cccaaccccatgatgtccctgcagatgccagagaggtgttactgtgcagatgtggtatat
cctatggccgttgtagccactgcagaacgtggtcttattgtttaccagctggaaaatcag
ccttcagagtttcgacgtatagagtcacctctgaagcatcagcaccgttgtgtggctatc
tttaaggacaagcagagtaaacctactggttttgcgctgggcagcatcgagggacgagtt
gccattcattacataaacccacctaacccagccaaggacaatttcacctttaagtgccac
aggtccaacggaaccaatactgccacaccccaagatatttatgctgtgaatgctatctcc
tttcaccctgtccatggcactctggcgacagtaggctctgatgggcgctttagtttctgg
gataaagatgcccgcactaagctgaagacctctgaacaattagatcaaccaataacagct
tgttgcttcaataacaatggaaacatttttgcctatgcttccagctatgactggtctaag
ggacatgaatattacaatccccagaaaaagaattacatcttcttgaggaatgcagctgag
gaactgaagcctcggaacaagaaatggtga
DBGET
integrated database retrieval system