Cyprinus carpio (common carp): 109106068
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Entry
109106068 CDS
T05134
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109106068 (rc3h1b)
04121 Ubiquitin system [BR:
ccar04121
]
109106068 (rc3h1b)
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109106068 (rc3h1b)
Ubiquitin system [BR:
ccar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109106068 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
NS3_helicase_C
FYVE
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
109106068
NCBI-ProteinID:
XP_042573830
Ensembl:
ENSCCRG00000000368
UniProt:
A0A9Q9VZ26
LinkDB
All DBs
Position
B2:complement(6860311..6884977)
Genome browser
AA seq
1104 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVSKQQPVALITCPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTPGLLPEDVVTLEPGRKASMH
TNGGPLPQLIPRGTDPSTYDLLLKPKMDATSLSAPGSPPDSLDKCSLALTPHPVPHPRAE
HLPMPKQVPVMPRGAPQMYPQQQPQLFYSEPARPPPSGSQYDAQYPTGNPYQYQPPQYVP
SRYIRNPPPGEPPYPEPYPGYGPDRQYSSHHSGPHFSAHTYAQPSHYSRRHGHYPAPPPP
FAQTRDDLVRMSPVPLDVPPGAMPQPPAGPAGSLYHSQEPSSRDRYPPDGYYTAGPHPSQ
MRSHIGQDPYSRSQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPNDYPRE
YLEDGSKAFGSREPDYTGQYSPWSCDTIGSYIGSKDAKPKDVSSAVEMMNAEGKVLREPP
LDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAIASSQASGSKHMT
MTADYPYGNHSGWGGASYPQHQSINSQGHFSERLPVSAPDREQLKIELQQVNQQISQQTR
GMEAASNSMLLQREACALVSQPAAGVKWSSGGTVSSEQLSLELDHVELEIKKRTREIAME
NQVAHEYKLKATENGQPDRKVQLEELSLALGEVSNGSSGMKPASSMGGSMLSLTNKTSSL
TLCSADQAASSSDLQKNGVVHSCS
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgccccatatgcacccagacg
ttcgaggagacggtgcgtcggcccatcagtctgggttgcggccacaccgtttgcaagatg
tgcctcaacaaactgcaccgcaaggcttgtccctttgaccagacggccatcaatactgac
atcgagcagctgcccgtcaactcagcccttttacagctggtcgggggtcaggtgtccaaa
cagcaacctgtggcgctcattacatgtccagaggacaccaagcattatgatgaggcacgg
cagtgtgttgaggagctggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttgagtaatgctgctcaaagcatgctgagccgtcccatgcagaggaagctggtgactctg
gtgcactgtcagctggtggaagaggaaggacgggtcagggccatgcgggcggcccgttct
ctgggcgaaaggactgttactgagctcattttgcagcaccaaaacccccagcagctctcc
tccaacctgtgggctgcagtcagagccagaggctgccagttcctgggccccgccatgcag
gaggaggcactaaagctggtgttgttggccttggaagacggatctgctctttccaggaag
gttttggtcctctttgtggtccagagactagaaccaagatttcctcaggcctccaaaacc
agtattggacatgtagttcagctcctctaccgtgcctcctgcttcaaggtgactaagcga
gatgaggattcatcgctcatgcagttgaaagaggagttccgcacatatgaggcacttcgg
agggaacacgactctcagattgttcaaatcgcaatggagggaggcctccgcatcgccccc
gatcagtggtcttctctgctgtatggagaccagtctcataagtctcacatgcagtccatc
attgacaagctgcagaccccggcgtcatttgctcagagtgtgcaggagctgaccatcgca
ctgcagaggacgggtgaccctgccaatctcaaccggctgagacctcacctcgaattgctt
gctaacattgaccctagtccagatgctcctcctcctacctgggagcagctggagaagggg
ctggtggcagtaaagacggtggtgcacggcctagtggacttcattcagaaccacagcaag
aagggtgccgacacgcagcagccaccacagcacagcaaatacaagacgtacatgtgcaga
gacatgaagcagaaaggaggctgtcccagaggagccagctgtaccttcgcccattctcag
gaggagctggaaaagtaccgtaaaatgaacaaacgtcttgctgcacgagtgccctgcacc
cctggcctgctgcctgaggacgtggtcacgctggagcctgggcgaaaggcctctatgcat
accaacgggggccctcttccccagctcatccccagaggcacagacccctccacatatgac
ctcttactcaagcccaagatggacgccactagcctgagtgctcctgggtcgccacctgac
tctttggataaatgtagcttggccctgacaccccaccctgtgcctcaccccagggcggag
cacttacccatgcccaagcaggtgccagtgatgcccagaggtgcgccacagatgtatcca
caacagcagccccagcttttctattcagagcccgccagacctcctccctcaggatctcag
tatgatgctcagtacccaacaggtaacccctaccagtaccaacctccgcagtatgtccct
tcccgctacatccggaatccgcctccaggagagccaccttacccagagccctacccggga
tacggcccagatcgccaatattcgagccaccactctggtccccatttctcagcccacaca
tacgcacagccctcacattacagtcgcagacacggacactatcccgcaccaccacctccg
tttgcccagaccagagatgacttggtcaggatgagcccggttcctttggacgttcccccg
ggcgctatgcctcaacctccagcagggcctgcaggttctctgtaccactcccaggaaccg
tcatccagagacagatacccaccggacgggtactacacagctggaccgcaccccagccaa
atgaggtcccacataggacaggacccgtacagccgctctcagcccagtctggatgacttg
catcgcaggcgcaaagagctgcttgtccagctagaggagagaaaagtcatctctcctccc
cccttcgctgcctctccgactctccctacacacccgttccccaacgactaccctcgggag
tatttggaggacggctctaaagcctttgggagtcgggagccagactacactgggcaatat
tccccctggtcatgtgacaccataggatcatacattggctccaaggatgctaaaccaaaa
gatgtcagtagtgctgtggagatgatgaatgcagaggggaaagttctccgtgaacctcca
ctggacactcagcggcgctctgcggaagccaaagacgacgatcccatcattccctttggt
cctctgcccactgtgtctccttttggtgccatttcacgtacctctaaaacaggttaccag
accactggacctgtacaggccatagcatcctcacaggcctcgggctccaaacacatgacc
atgacagcagactatccgtatggaaaccacagcggatggggtggagcatcgtaccctcag
caccagagcatcaactctcagggacacttcagcgagcgtctgcccgtgtctgcccctgac
cgcgagcagctcaagattgagctccagcaagtcaaccaacagatcagtcagcaaacccgc
ggcatggaggctgccagtaactctatgctcttgcagagggaggcgtgtgcgctggtgtct
cagcccgcggctggagtgaagtggtcttcaggtggcactgtgtccagtgagcagctcagc
ctggagcttgatcatgtagagctggagatcaagaagagaacccgtgaaatcgccatggag
aatcaggtggcccatgaatacaagctgaaggccactgagaatgggcagcctgaccgtaaa
gtccagctggaggaactctctttagcattgggtgaggtgtctaatggatccagtggcatg
aagccagccagtagtatgggaggatctatgctgtcgcttaccaataagacgtcttctctc
accctctgctccgccgaccaagcagcgagtagctcagaccttcaaaagaatggtgttgtt
cactcttgctcttaa
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integrated database retrieval system
