Cyprinus carpio (common carp): 109106085
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Entry
109106085 CDS
T05134
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109106085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109106085
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109106085
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109106085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
109106085
NCBI-ProteinID:
XP_042628719
Ensembl:
ENSCCRG00000009050
UniProt:
A0A8C1VGD5
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Position
A16:complement(13084241..13092407)
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AA seq
895 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRHHI
LMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEENEFIYDDLDLEEIPTTLMA
TSPQGHTEDDMFLQSSSTPTSTTSSSPIPPSPATGTTEISEEKRVRSTDSEISQSPVKNG
NPSLSSFSSSASSGSGSSSSSSSLVSVATVVGGCTAISGGSNLLGSFSSAVQQHVPQSQQ
QAQVKLSSTSTPSNNTPSPPSHPTLPASTTSSLPSSSTPGPVTSNSQSQASSVPGVEGSR
LGLGLVKGGVTVTSSSSGAQMPGLGMAGMSGSLNTMAGLLSGSTPAPYAQAAAGGTAGSA
SSGPVGSSSGSSGISIPSGGSGGANTGATSNGTGAGVSLSLLGSSPGHGALTGGILNLVP
GQTALQGSTQIPVSHVGTAPGGGTGESGLGGNGSSSVASAGVGTNAVPARPPSGLKQNGA
TSYSAVVADNTPDSSLSSASLSQNSHSSSSSSSTNQILDNGPSLLSSITLPPSSPSPAFT
DSTPGGGSLLNGPHSYTLNTEAIKAPEPPSSLKAMAERAALGLTLDGEISSLHLPDRAPP
GPTSAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQESTWTHMPHPSDSERIRQYL
MRNPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRF
HTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactacaaggtgaaatagatcgatgtttgaaaaaagttgctgaa
ggagtcgaacagtttgaagacatttggaaaaagcttcataatgcagccaatgccaatcag
aaggaaaaatacgaggccgatctcaaaaaagagattaaaaagctgcagcggctacgagac
cagattaagacatgggtggcgtccaatgagatcaaagacaaacggcagctagtggagaac
cggaagcttattgaaacgcaaatggagcgatttaaggttgttgaaagagaaaccaagaca
aaggcctactctaaagaggggctgggcttggctcagaaagtggacccggcgcagaaagag
aaggaggaaacagaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgagagtgaagttgagtccctctctgttcaaacacggaagaagaaaggagacaaa
gagaagcaggatcggattgaagagctaaagaggttaatcgaaagacaccgacaccacatt
cttatgctagagaccatcttgaggatgttggataatgattcgatccaggttgacgctatc
cataagatcaaagatgatgtggagtattacattgactcttcgcaagacccagactttgaa
gagaacgagttcatctatgatgatctggatttggaggaaataccaacaactttgatggca
acgtctcctcagggccatactgaagatgacatgttccttcagtccagcagcacaccgacc
tccaccacttcctcttcccccatccctccatctcctgcaacaggcacaacggagatttcg
gaggaaaagagagtccgatctacagacagtgaaatcagtcagtctcctgtgaagaatggc
aacccatctctctcgtccttctcctcatccgcctcctcaggatcaggctcctcctcctcc
tcctcttcgctggtttctgtggctactgttgttggtggctgcacagcgatctctgggggc
agcaacctgctgggaagctttagcagcgcagtgcagcagcatgttcctcagtctcagcag
caagcacaggtcaaactctcctcgacatccacaccctccaacaacacacctagtccacct
agccaccccacgctacctgcctccactacttcctctctgcctagttccagcacacctggc
ccagttacttccaattcccagtcccaggcctcatctgttcctggggttgagggctctaga
ctgggtttgggccttgtgaaggggggcgtgacagtgaccagcagcagtagtggggctcag
atgccaggtctgggcatggcaggcatgtctggttctctcaacaccatggcagggcttctc
tcaggctctacccctgctccctatgcccaggcagctgctggtggaacagcaggtagtgcc
tccagtggtccggtggggagcagcagtggtagttctggcatatccataccgagcggaggt
tcagggggagcaaacacaggcgcaaccagtaatggcacaggtgcaggggttagtttgagc
ttgctagggtccagtccgggtcatggtgctctgaccggagggattctaaacctggtaccg
gggcagacggctctccaggggtctacacagatacctgtgagccatgtgggcacagcacct
ggaggaggaactggagagagcggtttgggtggaaatggaagcagttctgtggcaagtgca
ggagtggggacgaacgcagtgcctgcaagaccccctagtggcctcaaacaaaatggagca
accagttacagtgctgtggttgcggacaacacaccagactcctcacttagcagtgccagc
ctatcacaaaacagccattcctcatcctcgagctcatcaaccaatcaaattctggataat
ggccccagtttattgagttctatcactctacccccctcctccccatcacctgccttcact
gacagcacacctggtggtgggagtctgctaaatggcccacactcctacacactcaacaca
gaagccatcaaggctcctgaaccaccaagctctctgaaagctatggcagaacgggctgca
ctgggattgacactggatggagagatttcatcactacatctcccagatcgagccccacct
ggacccacatcggcccctcagcctgccgtttcagaggtcaacctgccgccatctttaggg
gcatgtccgctaggtcccacccccctcactaaagagcagctttaccaacaggcaatgcag
gagtcaacatggacacacatgccccacccgtccgattcagagagaatcaggcagtatttg
atgagaaacccctgtcctacaccgccattccaccaccaggttcccccacatcattcagac
tctattgagttctaccagagattgtccactgaaacgctcttcttcattttctactacctg
gagggcacaaaggcgcagtacttgtcggctaaagcgttgaagaagcaatcgtggaggttc
cacaccaaatacatgatgtggttccaacggcacgaggaacccaagaccatcactgatgag
ttcgaacagggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaa
ggatttacctttgagtacagatacctggaggaccgagacctgcagtga
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