Cyprinus carpio (common carp): 109106850
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Entry
109106850 CDS
T05134
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109106850
03015 mRNA surveillance pathway
109106850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109106850
03041 Spliceosome [BR:
ccar03041
]
109106850
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109106850
Spliceosome [BR:
ccar03041
]
Complex C
Other components
EJC/TREX
109106850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
RSB_motif
FlaC_arch
Motif
Other DBs
NCBI-GeneID:
109106850
NCBI-ProteinID:
XP_042599278
UniProt:
A0A8C1G9G2
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All DBs
Position
B17:6202716..6208079
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AA seq
663 aa
AA seq
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MAVVVRSLQDQLEKAKESLKSVDENIRKLTGRDPSELRPGQNRRHTITGPGGGRGRGINL
LRRGLSDSGGGPPAKQRDIAGALLRLAGDERARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESTVSTDRLKRRQEIEQKLEV
QAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNSKLIKFIRTKTKP
PIFYLPGRMCSATQKLLEESQKKLNGVFDERREAFAEQLNKMEARPRRQSQRTGDREMED
GRRAEETKKEDQEEGKVGVGRTGKRHNVEMEDEEEDVVEEEGEESSEIREQEGDQEQSEK
DKHEESELKAEEEDEDEDEEDVGTSEVKEEGEEQMEVAEVVREDEAQSKLQVESPEATVE
EVGNVQKEEEQETENENQQEIVTDSQQTPESHMEIQPEECKEPQLDVPTPSVMEHDTKQD
DTAPETQQTLLEPDPEIPQEQSQEPSVQPQEAKADTKEASEETDEARGRAKVRAKRSKSR
SSTSSSSSSSSSSTSGSSSSSSGSSSSSSGSSSSSSSSRSRSHGRERDGRDHKRRRRPSD
RERRKSGGERGHKSSKGSGRESKGSKDKNSKPDKKRTSTEGSRSARRSSRSERDRKSDRK
DRR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtcgtgcgaagtttgcaagaccagctggaaaaagccaaggaaagcttaaag
agcgtggacgaaaatattcgaaaactaaccggcagagatccgagcgaattaagaccgggt
caaaacaggagacataccatcacaggcccaggtggaggtagggggcgtggaatcaatttg
ctgaggcgtggactctcagatagtggtggaggacccccagccaaacagagagacatcgca
ggggcactcttgaggctggcaggggatgagcgagccaggagagattcacgccatgacagc
gacgctgaggatgatgacgatgtcaaaaaaccagcgttgcagtcatctgtggttgctacc
tccaaagaacgtacgcgccgagatcttattcaagatcagacaatggatgagagaggaaag
cagagaaaccggcgcatgtttggcctattgatgggaacattgcaaaagtttaagcaggag
tctactgtgtccacagaccggttaaaaagacgccaagaaattgagcagaaattggaagtg
caggcagaacaggagcgtaaaaaagttgagagcgaaaggagagagctctttgaagagaga
cgtgccaaacaaacagaactgcggcttctggagcacaaagtggagctcgctcaactgcaa
gaagagtggaatgcacataattcaaagctcatcaagttcattcgcacgaagaccaaaccc
ccgatcttctacctgcccgggcgaatgtgctccgctactcaaaagctcctggaggagtct
cagaaaaaattaaatggtgtgtttgatgagagacgtgaagcctttgcagagcaactcaac
aaaatggaggctcggccaaggcgtcagtcccaaaggacaggtgacagagaaatggaggat
ggccgtcgggctgaagagacgaagaaagaagatcaagaggagggtaaggttggagtaggg
cggacaggtaaaaggcataatgtggagatggaggacgaggaggaagatgtagttgaggag
gaaggagaggagagctcagagattagggagcaggagggagatcaagagcagagtgagaag
gataaacacgaggagagtgagctaaaggcagaggaggaagatgaggatgaggacgaggag
gatgtaggaacaagtgaggttaaggaagagggagaagagcagatggaagttgcagaagtt
gtgagggaagatgaggcacagagtaagttgcaggttgagagtccagaagccacagttgaa
gaggtaggtaatgtgcaaaaggaggaagagcaggagacagagaatgagaatcagcaggaa
attgtcacagactctcagcaaacccccgaaagccacatggaaatacagcctgaggagtgt
aaagagcctcaactggacgtcccgactcctagtgtgatggaacatgacaccaaacaagat
gacacggcgcctgagacccaacagacactgcttgaacctgacccagaaatccctcaagag
caaagccaagagccatcagtccaaccacaagaagccaaagcagacacaaaggaagctagc
gaggagaccgatgaggctcgcggacgggccaaagtccgtgccaagaggagcaagagccga
agtagcacttcttcttccagttcctcttcaagctcctccaccagtggatccagctcctct
tccagtggctccagtagcagttcctctggctcctcctcgtcatcttccagttcacgctcc
cgtagtcacggcagggagagagatggccgagatcacaaacgccgccggagaccgtcggac
agggagcgcagaaagagcggcggtgagagaggacacaagtcctcaaaaggcagtggacga
gaaagcaagggctccaaagacaagaactccaaacctgacaagaagaggacgagtacggaa
ggaagcaggtcagcgaggaggtcctccagaagtgagagggatcggaagtctgatcggaag
gatcgacgttga
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