Cyprinus carpio (common carp): 109107994
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Entry
109107994 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109107994
03015 mRNA surveillance pathway
109107994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109107994
03041 Spliceosome [BR:
ccar03041
]
109107994
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109107994
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
109107994
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
109107994
NCBI-ProteinID:
XP_042598271
Ensembl:
ENSCCRG00000006665
LinkDB
All DBs
Position
B17
Genome browser
AA seq
926 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKIASLKKIDEDKREKESKERAQSKSPKRRKSRSPVKRDRKS
SPSRSPRRKPSPAASPPSSPPNHKEEPKQEPDQSESSKPEPLVQEASSTSDLVSDMKPDS
VSEAVKESSPDKTSKSEDRPKPRDRDREKDGRRDRPHQRSRSPRSRRRPRSRSRSFSPRR
RTSPRRRISPRRRSPPRRQPPSRHRRSRSPVHRRRSRSRSSSGSSSSRSPHKRAGKRGSA
TPPRKLPRRSDPSSPSRRRGHSPSGPDTSPSAVKHRPGGRNDSRSPSPKPRRSDGSESEE
EKVGKGSTADSVQQRRQYRRQNQQSSSDSGSSSSSEDEGPRRQNRGAGTRNGEIRRRRSH
SPASPRRRHRDGSPRKRRSPSPAGRRHRSPSPVRRRRSPSPPPRRRSPSPPHRRFTPPIQ
RRYSPSPPPAQKRRSSGSPPKRRRSPSPVSKRRGSPSPLSKRRVSPTPFKKHRFSPTPFK
KHRVSPTPVQKHRVSQPPILTKRRGSPSSLSKRRASPSPIAKHRGSPSPVAKRRGSPSPV
AKRRGSPSPVAKRHPSRSPKRSRGSSPGKRRTPPSSASPPPRHRRSPPAARGRDTRSSPH
STRVSSSPPARYGPSGSSPQRQRRQTSPSHSTRPIRRVSRTPEPRKSQRGSQSPQPVRRQ
VSRSPSASPPPPAPTAQKRPASVSPSRSASRSPPPPAKKNSSVSPSPSPNKNSDAEGSKK
KKKKKEKKHKKEKKHKKHKKQKKEKSGEEKSGGAAGGHGQEAEPDSDQKKESESEVEDSL
DDLEKQLREKALRSMRKAQMSPSSQS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcggagcaggataaccgcttcagcaacaaa
cacaagaagctgttgaagcaactcaagtttgcagaatgtctggagaagaaggtggatatg
accaaggtcaacctggaagtggtgaagccctggataacccagcgagtgacggagatcctt
ggctttgaggatgatgtcgtcatcgaatttgtcttcaaccagctggaggaaaagaatcct
gatgggaagatgatgcagattaatctgaccgggtttctgaatgggaaaaatgctcgggag
ttcatgaaggacctctggccgctgttactaagcgcccaggagaacatcgctggtatcccg
tctgccttcctggagcagaagaaagaggagatcaaacagagacagattgaacaggagaaa
attgcctctctgaaaaaaatagatgaagataaaagagagaaggagagcaaagaaagagct
cagtcaaaaagccctaaaaggaggaagtcccgctcgcctgtgaagcgtgaccgtaagtcc
agtccttctcgatctcctcgccgaaaaccgagcccggctgcctcgccgccttctagtcca
cccaatcataaagaagaaccaaagcaagaaccggaccaatcagagagctccaaaccagag
ccactcgttcaggaggcttcctctactagtgatcttgtgagtgacatgaaaccggactca
gtgtctgaggctgtgaaagagtcatctccagataaaacgtccaaatcagaagacaggccc
aaacccagagacagggacagagagaaggatggacgtagagatcgcccacatcaacgctct
cgttcaccccgctctcgtagacgacctcgatcccgctctaggtcgttctccccgcgtcgc
agaactagtcccaggaggcgaatctctccgagacgtaggagccctcctagacggcaacca
ccctctaggcatagacgtagccgttcacctgtccacaggcggcgctctcgctcccggtcc
tcctctggtagttcctcttctcggtcaccccataagagagcagggaaacgtgggtcagct
accccgcccagaaaacttccacgtcgttctgacccctccagcccttccagaagaagaggt
catagtccttcaggaccagacaccagcccttcagctgtgaagcacaggcctggtggaaga
aatgactctcgctctccttctcctaaacccaggcggtcggatggatcagagtccgaggag
gagaaggtgggcaaagggtcaacagcagattctgtccagcagcgacgtcagtatcgcaga
cagaatcagcagtcctcttcagactctggttcatcctcttcttctgaagacgaaggtccg
aggaggcagaataggggggcaggtaccaggaatggagaaatcagaaggcggcggagccat
tcacctgcatcgccacggagaaggcacagagatggatccccaagaaagagacgttctcca
tcacctgcaggccgcagacatcgttcaccttctcctgttcgccgccgcaggtcaccgtct
cctcccccaagacgcagatctccatctccacctcaccggcgcttcactccccctatccag
cgcagatacagtccctcccctcccccagctcaaaagagacgctcatcagggtctccgccc
aagcgcagaaggtctccctctcctgtgtccaagcgtagaggctctccttcacctttgtcc
aaaaggagagtctcccccacacctttcaaaaaacatagattctcccccacacctttcaaa
aaacacagagtctcccccacacctgtccaaaaacacagagtgtcccaacccccaattcta
actaaacgtagaggttctccttcatctctgtccaaacgcagagcgtctccctcacccatt
gctaagcatagagggtctccttcacctgttgctaaacgcagaggatctccctcacccgtg
gccaagcgtagagggtcgccctctcctgtggccaaacgtcacccctctcgatccccaaaa
cggagtcgtggcagtagtccaggaaaaagacgtactccgccctcttctgcttcaccccca
cctcgccaccgcagaagtccccctgcagcccgaggcagagatactcgttcttctccccac
agcactcgagtttcttccagtcctccagcccgatatggcccctctggttcatccccacag
agacaaagacgtcagacgtccccgtctcatagcaccagacccattcgcagggtctcccgc
acaccagagccacgcaaatctcagagaggttctcagagcccccagccagtaaggaggcag
gtttcacgttcaccatctgcttctcctcctcctcctgctccaacggctcaaaagcggcct
gcttctgtctcaccttctcgctctgctagccgttctccacctccacctgccaaaaagaac
agcagcgtctccccgagcccatcacctaacaagaactcagatgcagaaggtagtaagaag
aagaaaaagaagaaagaaaagaaacacaagaaagagaagaaacacaagaagcataagaaa
cagaaaaaggagaagagtggagaagaaaagagtggaggggcggcaggaggacacggacag
gaagcagagccagattctgatcagaaaaaggaatcagagagtgaagtagaagacagtttg
gatgatctggagaagcaactacgtgagaaagctcttcgctcaatgaggaaggcccagatg
tccccatcatcccagtcctga
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