Cyprinus carpio (common carp): 109107995
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Entry
109107995 CDS
T05134
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109107995 (srrm1)
03015 mRNA surveillance pathway
109107995 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109107995 (srrm1)
03041 Spliceosome [BR:
ccar03041
]
109107995 (srrm1)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109107995 (srrm1)
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
109107995 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
109107995
NCBI-ProteinID:
XP_042630009
Ensembl:
ENSCCRG00000006665
UniProt:
A0A9R0BBZ8
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All DBs
Position
A17:11318690..11332518
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AA seq
909 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEDKREKESKERAQSKSPKRRKSRSPVKRDRKS
SPSRSPRRKPSPAASPPSSPPNHKEEPKQEPDQSESSKPEPLVQEASSTSDLVGDMKPDS
VSEAVKESSPDKTSKSEDRPKPKDRDREKDGRRDRPRHRSRSRSPRSRRRPRSRSRSFSP
RRRTSPRRRISPRRRSPPRRQPPSRHRRSRSPVRRRRSRSRSSSGSSSSHSPHKRAGKRG
SATPPRKLPRRSDPSSPSRRRGRSPSGPGTSPSAVKPRPGGRNDSRSPSPKPRRSDASES
EEEKVGKESTADSVQQRRQYRRQNQQTSSDSGSSSSSEDEGPRRQNRGAGARNGEIRRRR
SHSPASPRRRHRDASPRKRRSPSPAGRRHRSPSPVRRRRSPSPPPRRRSPSPPHRRFTPP
IQRRYSPSPPPAQKRRSSGSPPKRRRSPSPLSKRRGSPSPVSKRRGSPSPVSKRRGTPSP
LSKRRGSPSPVTKRRVSLSPVAKRRGTPSPIAKRRGSPSPVSKRRASPSPVAKRRASPSP
VTKRRSSPPPVAKRRGSPSPVAKRRSSRSPKRSRGSSPGKRCTPPSSASPPPRHRRSSPN
PPAAQRGRDSRSSPSAHSARVSSSSPARYGPSGSSPQRQRRQTSPSHSTRPIRRVSRTPE
PRKSQRGSQSPQPVRRQVSRSPSASPPPALTAQKRPASVSPSRSASRSPPPPAKKNSSVS
PSPSPNKNSEAEGSKKKKKKKEKKHKKEKKHKKHKKQKKEKSGEEKSGGAEGGHGQEAEP
DSDQKKRVK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcagagcaggataaccgcttcagcaacaaa
cacaagaagctgttgaagcaactgaagtttgcagaatgtctggagaagaaggtggacatg
accaaggtcaacctggaagtggtgaagccctggataacccagcgagtgacggagatcctt
ggctttgaggatgatgtcgtcatcgaatttgtcttcaaccagctggaggaaaagaatcca
gatggaaagatgatgcagattaatttgaccgggtttctgaatgggaagaacgctcgagag
ttcatgaaagacctctggccgctgttgctaagtgcccaggagaacatcgctggtattcca
tctgccttcctggagcaaaagaaagaggagatcaaacagagacagatcgaacaggagaaa
cttgcctctctgaaaaaaatagatgaagataaaagagagaaggaaagcaaagagcgagct
cagtcaaaaagccctaaaaggaggaagtcccgctctcctgtgaagcgtgaccgtaagtcc
agtccctctcgatctcctcgccgaaagccgagcccagctgcctcgccgccttccagtccg
cccaatcataaagaagaaccaaagcaagaaccagaccaatcagagagctccaaaccagag
ccacttgttcaggaggcttcctctactagtgatcttgtgggtgacatgaagccagactct
gtgtctgaggctgtgaaagagtcatctccagataaaacatccaaatcggaagacaggccc
aaacctaaagacagggacagagagaaggatggacgtagagatcgcccacgccaccgctct
cgctctcgttcacctcgttctcgtagacgacctcgatcccgctctaggtctttctctcct
cgtcgcagaactagtcccaggaggcgaatctctccaagacgtaggagccctcctagacgg
caaccaccctctaggcatagacgtagccggtcacctgtccgcaggcggcgctctcgctcc
cggtcttcctctggtagttcatcctctcattcaccccataagagagcagggaaacgtggg
tcagctacccctcccagaaaacttccacgtcgctctgacccctccagcccttccagaaga
cgaggtcgtagtccttcaggaccaggcaccagtccgtcagctgtgaagcccaggcctggt
ggaagaaatgactctcgctctccttctcctaaacccagacggtctgatgcatcagagtcc
gaggaggagaaggtgggcaaagagtcaaccgcagattctgtccagcagcgacgtcagtat
cgcagacagaatcagcagacctcttcagactctggctcatcatcttcctctgaagatgaa
ggtccaaggagacagaacaggggggcaggtgcaaggaatggagaaatcagaaggcggcgg
agccattcacctgcatcaccacggagacggcacagagatgcatccccaagaaagaggcgt
tctccatcacctgctggccgcagacatcgttcaccttctcctgttcgccgccgaaggtca
ccctctcctcccccaagacgcagatctccatctccacctcaccggcgcttcactccccct
atccagcgccgatacagtccctcccctcccccagctcaaaagagacgctcatcagggtct
cctcccaagcgcagaagatctccgtcacctttgtccaagcgtagagggtctccatcacct
gtgtccaagcgtagagggtctccttcacctgtttccaagaggagagggactccttcaccc
ctgtccaaacgcagaggatctccatcacctgtgaccaagcgcagagtgtccctttcaccc
gttgctaagcgcagaggaactccctcacccattgctaagcgtagagggtctccttcacct
gtgtccaaacgcagagcatctccctcacctgttgctaagcgcagagcatctccgtcaccc
gttactaagcgcagatcatctcccccacccgtggccaagcgtagagggtcgccctctcct
gtggccaaacgtcgctcctctcgatccccgaaacggagtcgtggcagtagtccaggaaaa
agatgtactcccccctcctctgcttcacccccaccccgccaccgtagaagctctccaaat
cctcctgcagcccaacggggcagagatagtcgctcttctccctctgcccatagcgctcga
gtgtcttccagttctccagctcgatacggcccctctggttcatccccacagagacaaaga
cgtcagacgtccccgtctcatagcaccagacccattcgcagggtttctcgcacaccggag
ccacgtaaatctcagagaggttctcagagcccccaaccagtaaggaggcaggtttcgcgt
tcaccatctgcttctcctccacctgctctgacggctcaaaagcggcctgcttcagtctca
ccttctcgctctgctagccgttctccacctccacctgccaaaaagaacagcagtgtctcc
ccgagtccatcacctaacaagaactcagaagcagaaggtagtaagaagaagaaaaagaag
aaagaaaagaaacacaagaaagagaagaaacacaagaagcataagaaacagaaaaaggag
aagagtggagaggaaaagagtggaggggcagaaggaggacacggacaggaagcagagcca
gactctgaccagaaaaagagagtgaagtag
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