Cyprinus carpio (common carp): 109108516
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Entry
109108516 CDS
T05134
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109108516 (scaf8)
03041 Spliceosome [BR:
ccar03041
]
109108516 (scaf8)
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109108516 (scaf8)
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109108516 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109108516
NCBI-ProteinID:
XP_042598780
UniProt:
A0A9R0AI01
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All DBs
Position
B17:complement(22324294..22377457)
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AA seq
1286 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVVDSIVRQSRHQFGQEKDVFAPRFSKNIITTFQNLYRCPADDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMAAGLPPPSATPVSASSAVPVNSTTPGTPATPATPANIVQSLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGNESEHSEDSKKDASSSQLPVVPESINNSIF
HQLAEHLQQQNLEQFQKQLMEHQQHQQKSMTMESQDALFGPETSAPPGQSSAPPQLPEQE
AKMDDSIDNQQQDMDIDEGQDTVDEELFEAEEKKTSRTRPRIRKRFLSMSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERQAREREKERQKKGLPPIRSRVLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLGTGSYKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNSEWE
SQRNTETAKDTQSQAVTAETSTASSTPSEAFTQPVTMMPMQIPVAQTVPAVGLMPPSFPV
TMAMPPPGFGPPPPFLRAGFNASQPPPGFMATPGVGPSAVGTSLASAQTSLVQPSMPTTQ
ENSKDSLFGAMIPPTSTIPGSFIPSAMPGAGVFNPVGAQHQQSNTDKTPQSAETMETASE
MTLQGMQNAVRSRMGLLGMHPSASLTHPLSGQRMAGLLPLELRPNLLQGPGGRFPLLMQP
GLAHQTNNVLDASLQAQARVRVPFSQMEQFNRAEGTFARAPNPSSAGAESLAKTDNETPP
RSDVGAQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPVPARPPLLERPPRTVLQAEGRE
GRRENMSGGFRAESRWGPPRGDFDERDMRGMSGGPPKSFQEDRSNPNFQNRFEGRSGSSS
GPAWNRGTGPSFNTNMHQDYDDRRRPWDRDDRDMDFRGEMNGNRQSRERERERERDRNRD
RERGRERNRERDRERERERDRERENEKDKERWTPLSSQSQPQPLLPKSQPLLPLPTPLVT
QPQAQKQAQMTQHQPHPEPQPTERDAEPQPEVTPELQSQPKSLSPPEETASSQEQDGASC
VNGMETDSKPQLNILEPASQSTAEPSRSPSPSLTSTPTCFQNEPLKGEKTPEMSVSSSVD
GDTEQTGPKVNAETEPELEKTDTEET
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaggcgtttaacggcgagctgtactcactgaatgaatacaagccaccg
atctccaaagcaaagatgacccagattacaaaatcagcaattaaagctataaagttctac
aaacatgtcgtccaaagtgtggagaaattcattcaaaagtgcaagcctgaatacaaagtc
cccggtctgtatgtcgtcgactccattgtacggcagtctcgtcaccagtttgggcaagag
aaagatgttttcgctccacgctttagtaagaacatcattaccacgtttcaaaacctctac
cgctgcccagctgatgacaagagtaagattgtccgagtactaaatctatggcagaaaaac
aatgtcttcaagagtgacatcatccagcctctactggatatggcagcagggctcccacct
cccagcgctacgcccgtctctgccagcagtgccgtacccgtcaacagcactactcctgga
actccagcaactcctgccaccccagccaatatagtgcagagtctcccagactgggcgtct
cagatctccaacacagacacagtggctgcggtcgcccagatcttacagagtccccagggc
cagcagttgcagcagctggttcagagcctgcagatgcagcagcagaaacctcagccctct
ctgctgcaggcgctggatgcaggtttggtggtgcagctgcaggccctgactgcacagctc
actgcagccgcagcagccaacacgctcaacccgctggaacagagagtttcctcctttaac
aagaagctgttgggtcagtttgattttgggaacgagtcggaacacagcgaggattctaag
aaagatgcttcatcatctcagttacctgtggtgccagagtccatcaataactcaatattt
catcagctggccgagcatcttcagcagcagaacctcgagcagtttcagaagcagctaatg
gagcaccagcagcatcaacagaagtctatgaccatggagagccaggatgccctctttggt
cctgaaacttcagcccctcctggccagagcagcgccccaccacagctcccagagcaagaa
gcaaaaatggatgactccattgataaccagcaacaggacatggatattgatgagggacag
gatactgtagatgaggagctctttgaggctgaggagaagaaaaccagcagaacacgtcca
aggattcgtaaaagatttttgtctatgtcacctaagagaaggaggtcaaggtctcgctca
gggtcccgaaagcgcaaacacaggaagagatcacggtctcgctcaagggacagaaagagg
aagtcctcacgttcttattccagtgagcgacaagcacgggaaagagaaaaggaacggcag
aaaaaaggacttcctcctatccgctcaagggttctgagtgtttgcagcactactctgtgg
gtcggtcaagtggacaagaaagccacccaacaagatcttactaacctcttcgaagagttt
ggccagattgaatctatcaatatgattcctcccagaggctgtgcttacatctgtatggtt
catcgtcaggatgcataccgtgcccttcagaaactggggacaggctcttacaaaatcggt
tcaaaggttatcaaaattgcctgggccctcaataaaggggtgaaacaggagtataagcag
ttctgggatgtggaccttggggtgacttatatcccatgggagaaggtcaaactggatgat
ctggatgactttgcagagggaggcatgattgaccaggagaccgtcaacagtgaatgggaa
tcccagagaaatactgagaccgccaaagacactcagagccaggctgttactgctgaaacc
agtacagcaagcagcacacccagcgaggcctttacccagcctgtcactatgatgcccatg
cagattccagtggcacagacggtccctgctgttggccttatgcctccatccttccctgtc
accatggcaatgcccccaccaggctttggtcccccaccaccttttctaagggcagggttt
aatgcctcacagcctcctccaggtttcatggccacgccaggagtaggaccgtctgcagtt
ggaaccagtcttgcttcagctcagacctctctagtgcagccttcgatgccaaccactcaa
gagaacagcaaggattctctgtttggagccatgattcctcccaccagtactattcctggg
agttttattccgtcagcaatgcccggggcaggagtctttaaccctgtgggagcacagcat
cagcagagcaacacagacaaaacgcctcagtcggcagaaacgatggagaccgcttctgag
atgacactacagggaatgcaaaatgcagtgcgcagtagaatgggtctgctgggtatgcac
ccttctgcatcgctaacacatcctctctctggccagaggatggcagggctgcttcccctg
gaactacgacccaacctgctccagggacctgggggccgcttccccctgctcatgcagcca
ggccttgcacatcagaccaacaatgtcctggatgcttcacttcaagcccaagcccgcgtt
cgggttccattctctcaaatggagcagttcaaccgcgctgaaggcactttcgcaagggca
cctaacccttcgtctgctggagctgagagtctggccaagactgataatgaaaccccaccc
aggtcagatgtaggtgcccaacaagaaggagatcaggactatcgctttccaccgccagag
aagcagagcacggggttgttgaagacgcctcctttggagatgcgtactgaacctgtgcct
gccagaccacctttactagaacgacctccgagaacagtcttgcaagccgaaggtcgagag
ggtagaagagaaaatatgtctggaggtttcagggcagaaagtcgctggggaccacccagg
ggggacttcgatgagcgagacatgagggggatgtctggtggacctccaaagagtttccag
gaggatcgttccaaccctaactttcagaatcgatttgaaggccgcagtggaagttcatca
ggaccagcttggaatcgtggaaccggaccttcttttaacaccaacatgcaccaggactac
gatgatcgtcgcagaccttgggaccgagatgacagggacatggacttccggggtgaaatg
aacggcaatcgtcaaagccgggagcgagagcgagaaagggagagggacaggaatcgggac
cgtgaacgcggcagagagcggaatcgcgagagagaccgagaacgggagcgtgaaagggac
agagagagggagaatgagaaggacaaagagcgctggacacccctttcttcacaatctcag
ccccaaccgctgcttcccaagtctcagccgctgctccctctgccgaccccattggtcacc
cagcctcaagcacaaaaacaagcgcaaatgacccaacaccagcctcatccggaaccacag
ccaacagaacgagatgctgaaccacaaccagaggtaacaccagagctgcagtcacagccc
aagtcactcagcccccctgaagagaccgcaagtagtcaagagcaggatggagcgtcatgt
gtcaatggaatggagactgattcaaaacctcagctaaacattttggaacctgcatcccag
agcactgcagagccctctcgtagcccctctccatcccttacctccacacccacctgcttc
cagaatgagcccttgaaaggagagaagaccccagaaatgtctgtttcctcctctgtggat
ggagacactgaacagactgggccaaaggtgaacgctgagactgaacctgagctagagaaa
acagacactgaggaaacataa
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