Cyprinus carpio (common carp): 109108519
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Entry
109108519 CDS
T05134
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109108519
03041 Spliceosome [BR:
ccar03041
]
109108519
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109108519
Spliceosome [BR:
ccar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109108519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
Motif
Other DBs
NCBI-GeneID:
109108519
NCBI-ProteinID:
XP_042630381
UniProt:
A0A9R0BDY6
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Position
A17:23563118..23607526
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AA seq
1296 aa
AA seq
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MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVVDSIVRQSRHQFGQEKDVFAPRFSKNIITTFQNLYRCPADDKSKIVRVLNLWQKN
NVFKSDIVQPLLDMAAGLPPPSFTPVSASSAVPVNSTTPGTPATPATPANIVQSLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVNSFNKKLLGQFDFGNDSEHNEDSKKDATTSQLPVVPESINSSIF
HQLAEHLQQQNLEQFQKQLMEHQHHQQKSMTMEGQDDIFGPENSAPPGQSSAPPQLPEQE
AKIDDSIDNQQQDMDIDEGQDTVDEELFEAEEKKTSSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERQAREREKERQKKGLPPIRSRVLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRSLQKLSTGSYKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNNEWE
SQRNTETAKETQNQAVKAETSTASSTPSEAFTQPVTMMPIQIPVAQTVPAVGLVPPSFPV
TMAMPPPGFGPPPQFLRAGFNASQPPPGYMATPGVGTSAVGTSLASAQTSLVQPSLPTTQ
ENSKDSPFGVMIPPGSFIPSAMPGAGVFNPVGSQHPQSSTDKMPQSAETMETASEITLQG
MQNAVRSGMGLLGMHPSASLTHPLSGQRMAGLLPLELRPNLLQGPGGRFPLLMQPGLAHQ
TNNVLDASLQAQARVRVPFSQMEQFNRAEGTFPRAPNPSSAGADSLAKADNETPPRSDSQ
QEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPVPARPPLLERPPRTVMQAEGREGRRENMS
GGFRAESRWGPPRGDFDERDMRGMSAGPPKGFQEDRSNPNFQNRFEGRSGSSSGPAWNRG
TGPSFNTNMHQDYDDRRRPWERQKDRDDRDIDFRGEMNGNRHSRERDRERERERDRNRER
ECGRERNRERDRERDRERDRERENEKDKERERKCWTPLSSQFQPQPLLPKSQPLLPLPTP
LVALPEAQEQVQINSPSLPVPQHQPHPEPQPTEPDAKPQPEVTPELQSQPKSLSSAEEMA
SSQEQEETSRINGMETDSKPQLNILEPASQTATEPSRSPSPSLTSTPTCFQNEPLKGKKT
PEMSVSSSVDADTEQTGPKVNAETEPELEKTDTEET
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaggcgtttaacggcgagctgtactcactgaatgaatacaagccaccg
atctccaaagcaaagatgacccagattacaaaatcagcaattaaagctataaagttctac
aaacatgtcgtccaaagtgtggagaaattcattcagaagtgcaagcctgagtacaaagtc
cctggtctgtatgtcgtcgactccattgtacggcagtctcgtcaccagtttgggcaagag
aaagatgttttcgctccacgctttagtaagaacatcattacaacgttccaaaacctctac
cgttgtccagctgatgacaagagtaagattgtccgagtactaaatctatggcagaaaaac
aatgtctttaagagtgacattgtccagcctctgctggatatggcagcagggctcccacct
cccagctttacgcctgtctctgccagcagtgccgtacccgtcaacagcactacacccgga
acaccggcaactccagccaccccagccaacatagtgcagagtctcccagactgggcgtct
cagatctccaacacagacacggtggctgcagtcgcccagatcttacagagtccacaaggc
cagcagttgcagcagctggttcagagcctgcagatgcagcagcagaaacctcagccctct
ctgctgcaggcgctggatgcaggtttggtggtgcagctgcaggccctgactgcacagctc
actgcagccgcagcagccaacacactcaacccgctggaacagagagttaactcatttaac
aagaagctgttgggtcagttcgattttgggaatgactcggagcacaatgaggattctaag
aaagatgctacaacatctcagttacctgtggtgccagagtccatcaatagctcaatattt
catcaactggccgagcatcttcagcagcaaaacctcgagcagtttcagaaacagctaatg
gagcaccagcatcatcaacagaagtctatgaccatggagggccaggatgacatctttggt
cctgaaaattctgcccctcctggccagagcagcgccccaccacagctcccagaacaagaa
gcaaaaatagacgactccattgataaccagcaacaggacatggatattgatgagggacag
gatactgtagatgaggagctctttgaggctgaggagaagaaaaccagcagcacccgttca
aggacacgctcgagatctcggtccaggtcacctaagagaaggaggtcaagatctcgctcg
gggtctcggaagcgcaaacacaggaagcgatcacgatctcgctcaagggacagaaagagg
aagtcctcacgttcttattccagtgagcgacaagcgcgggaaagagaaaaggaacggcag
aaaaaagggcttcctcctatccgctcaagagttctaagtgtttgcagcactactctgtgg
gtcggccaagtggacaagaaggccacccaacaggatcttactaacctcttcgaagagttt
ggccagattgaatctatcaatatgattcctcccagaggctgtgcttacatctgtatggtt
catcgtcaggatgcataccgctcccttcagaaactgagcacaggctcctacaaaatcggt
tcaaaggtcatcaaaattgcttgggccctcaataaaggggtgaaacaggagtataagcag
ttctgggatgtggaccttggggtgacttatatcccatgggagaaggtcaaactggatgac
ctggatgactttgcagagggaggcatgattgaccaagagactgtcaacaatgaatgggaa
tcccagagaaatactgagactgctaaagagactcagaatcaggctgttaaagctgaaacc
agtacagcaagcagcacaccaagtgaggcctttacccagcctgtcactatgatgccaatt
cagattccagtggcacagacagtccctgctgttggccttgtgcctccatccttccctgtc
accatggcaatgcctccaccaggctttggtcccccaccacaatttctaagggcagggttc
aatgcctcacagcctcccccaggttatatggccacgccaggagtaggaacatcagcggtt
ggaaccagtcttgcttcagctcagacctctctagtgcagccttcgctgccaaccactcaa
gagaacagcaaggattctccatttggagtcatgattcctcctgggagttttattccatca
gcaatgcccggggcaggagtctttaaccctgtgggatctcagcatccgcagagcagcaca
gacaaaatgcctcagtcggctgaaacgatggagacagcttctgagataacactacaggga
atgcaaaatgctgtgcgcagtggaatgggtctgctgggtatgcacccttctgcatctcta
acacatcctctctctggccagaggatggcagggctgcttcccctggaactgcgacccaac
ctgctccagggacctgggggccgcttccccctgctcatgcagccaggccttgcacatcag
accaacaatgtcctggatgcttcacttcaagcccaagcccgtgttcgggttccattctct
caaatggagcagttcaaccgtgctgaaggcacttttccaagggcacctaacccctcatct
gctggagctgacagcctggccaaggccgataatgagacaccacccaggtcagattcccag
caagaaggagatcaggactatcgctttccacctccagagaagcagagcacggggttgttg
aagaccccacctttggagatgcgtactgaacctgtgcctgccagaccacctttattagaa
cgacctccaagaacagtcatgcaagctgaaggtcgagaaggtagacgagaaaatatgtca
ggaggtttcagggcagaaagtcgctggggaccacccaggggggacttcgatgagcgagac
atgagggggatgtctgctggacctccaaagggttttcaggaggatcgttccaaccctaac
tttcagaatcgttttgagggccgcagcggaagttcatcaggacctgcttggaatcgtgga
actgggccttcttttaacactaacatgcaccaggactatgatgatcgtcgcagaccttgg
gaaaggcagaaggaccgagatgacagggacatagacttccggggcgaaatgaatggcaat
cgtcatagccgggagcgagacagagaacgtgaaagggagagggacaggaatcgggaacgt
gaatgcggcagagagcggaatcgtgagagagaccgagaacgggatcgtgaaagggacaga
gagagggagaacgagaaggacaaagagcgggaacggaaatgctggactcccctttcatca
caatttcaacctcaaccactgcttcccaaatctcaaccgctgctccctctgccgaccccc
ttggttgctctgcctgaagcacaagaacaagtgcaaattaactcaccatctctgccggtg
ccccaacaccagcctcatccagaaccacaaccaacagaaccagatgctaaaccacaacca
gaggtaacgccagagctacagtcacagcccaagtcactcagctccgctgaagagatggca
agtagtcaagagcaggaggaaacttcacgtatcaatggaatggagaccgattcaaaacct
caattaaacattttggaacctgcgtcccagaccgctacagagccctctcgtagcccctct
ccatcccttacctccacacccacctgcttccagaatgagcccttgaaaggaaagaagacc
ccagaaatgtctgtttcctcatctgtggatgcagacactgaacagactgggccaaaggtg
aacgctgagactgaacctgagctagagaaaacagacactgaggaaacataa
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