Cyprinus carpio (common carp): 109110123
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Entry
109110123 CDS
T05134
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109110123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109110123
03036 Chromosome and associated proteins [BR:
ccar03036
]
109110123
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109110123
Coactivators
SAGA/TFTC/STAGA complex
109110123
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109110123
STAGA complex
109110123
TFTC complex
109110123
SAGA complex
109110123
SLIK complex
109110123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
TFIID_NTD2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
VPS8_N
PROPPIN
WD40_like
eIF2A
LisH_PAC1
RAB3GAP2_N
LisH_TPL
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
109110123
NCBI-ProteinID:
XP_042617538
Ensembl:
ENSCCRG00000007522
UniProt:
A0A9Q9YC82
LinkDB
All DBs
Position
A1:30002005..30008542
Genome browser
AA seq
743 aa
AA seq
DB search
MAAVQDGQMELDAEKETKPEILSDGTSNLSGNTASGTLSSSPLTAAPAGGAPKMEDQQTL
IAVLQFLKRNKLTDSVEILRREAGLGEDQEDSQATDGSGGGKGDVDGGDANSLLSRVSIT
SAAAPQSMPVKRADDQPDVSVVLSAYSQQGDPSLYQVYYSGLKNFIESVLDCHRAELSQL
FYPLFVHMYLELVYNNHENEAKAFFEKFSGDQECYYQDDLRVLCGLTKKEHLKGNEVLLD
FRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSL
AGEGRRELNKAKVFHGLLKEPEIEVPLDDEDDEAENEEGKPKKKKTKKDSLGSKSKKQDP
NAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGPENLPSICFYTLLNAYQGLTAVDFT
DDSSLLAGGFADSTVRVWSVTPKKLRKVKSAADLNMIDKESDDVLERIMDEKTASESKIL
YGHSGPVYGVSFSPDRNYLLSSSEDGTVRLWSLLTFTCLVGYKGHNYPVWDTQFSPFGYY
FVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTCTRFHPNSNYVATGSTDRTIRLWDVL
NGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYSL
KFSRDGEILASGSMDNTVRLWNSMKAFDEVETDDFTATTGHIHLPDNSQELLLGTYHSKS
TPVTHLHFTRRNLLLAAGAYNSQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggacaaatggagctagacgcagagaaagagacaaagccagag
attctcagcgatgggacgtcaaacctctcggggaacacagcgagcgggacgctgtcctcg
tcgcccctcaccgctgcccccgccggcggagccccgaagatggaggaccagcaaacttta
atcgcagttctgcagtttctaaagcggaataaactgacggactctgtggagatcctgcgg
cgggaagccggtttaggagaagatcaggaggactcgcaggctaccgatggcagcggagga
gggaagggagacgtggatggaggggatgcgaactctctgctcagccgggtgtccatcaca
tcagcagccgccccccaaagcatgcccgtaaaaagagcagatgaccagccggatgtcagt
gtggtgttatcagcgtacagccagcagggggacccctccctgtatcaggtgtactacagc
ggcctgaagaacttcatcgagtccgtgctggactgtcaccgagcggagctgtcccagctc
ttctaccctctgttcgtccacatgtacctggagctggtctacaacaaccatgagaatgaa
gcaaaggctttctttgagaagtttagcggtgatcaggagtgttactatcaggatgacctg
cgcgttctctgcggcctcactaagaaagagcacctgaaggggaacgaggtgctgctggac
ttccgcaccagccgtttcgtgctgcgcatctcccgagactcgtaccagctgctgaagaga
cacttgcaggaaaggcataataaccagatatggaacatcattcaggagcacttgtacatc
gacatctttgacggcatgcctcgcagcaagagccagatcgacagcatgtccggcagtctt
gcgggagagggcagacgagaactcaataaagccaaggtattccatggactgctaaaggag
ccagagattgaggtcccgttagatgatgaagatgatgaagcagagaatgaagaagggaag
cccaagaagaagaaaacaaaaaaggacagtctgggctccaagagtaagaaacaagacccc
aacgctcctcaacagaacaggatccctctgccggagctgaaggactcggacaaactggat
aagatcatgtacatgaaggagagcaccaaaagaatccggctcggccccgagaacctgcct
tccatttgcttctatacgttgctcaacgcctaccagggtttgacggcggtagacttcact
gacgactccagtctgttagcgggagggtttgcagactccacagtccgcgtgtggagcgtc
acacccaagaaattgcgcaaagtcaaatctgcagcagatctgaatatgattgataaagag
tctgatgacgttctggagaggatcatggatgagaagacggccagtgagtcgaagatcctc
tacggtcacagtgggccggtgtatggtgtcagcttcagtccagacaggaactatctgttg
tccagttctgaggacgggacagtcagactgtggagtctgctgacgtttacgtgtctcgtg
gggtataaaggacacaactatccagtgtgggacactcagttctcaccctttggctattac
tttgtgtcaggaggacacgacagagtagcacgcctctgggcgacggatcattaccagccc
ttgcggatatttgctgggcatctagctgacgtcacctgcacctgcacgcgattccacccc
aactctaactatgtggccacaggctcgaccgaccgcactatacgcctctgggacgtcctg
aatggaaactgtgtccgcattttcacaggtcacaaggggcccatccattctctagcattc
tcacctaatggaaagttcctggcatctggatccacagacgggagagttttactatgggat
attggacatgggctgatgatcggagagctgaagggtcacacagacacaatttattccctc
aagttcagcagagacggagaaatcctggcatcaggttctatggataacacagttcggctg
tggaactccatgaaagctttcgatgaagtggagacggacgacttcactgcaacgacgggc
cacattcacttgcccgataactcccaggagctgctgctcgggacataccacagcaaatcc
acacctgtcacccacctgcatttcaccagacgcaacctgctactggccgcaggcgcctac
aactcccagtga
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integrated database retrieval system
