Cyprinus carpio (common carp): 109110219
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Entry
109110219 CDS
T05134
Name
(RefSeq) exosome complex component RRP46-like
KO
K12590
exosome complex component RRP46
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109110219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109110219
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109110219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
109110219
NCBI-ProteinID:
XP_018978806
Ensembl:
ENSCCRG00000036757
UniProt:
A0A8C2A9G3
LinkDB
All DBs
Position
A18:complement(15128592..15131908)
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AA seq
233 aa
AA seq
DB search
MTLMSATKGLCARTMMELDQSYSVLREYGSEQSLLSKPDGSSTFVQGDTSILAGVYGPAE
VKVSKEIYDRATVEVLIQPKMGLPGVRERAREQCVRETCEAALLLTLHPRSSVTVILQVI
HDDGSLLSCCLNAACMALMDAGLPMSHLFCSVTCAISKEGQIIIDPTARQEKECRALLTF
AIDSAECNVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRRYSKIK
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttatgagcgcgacgaaagggttgtgcgcgaggaccatgatggagttagatcaa
agttattcagttttaagagaatatggaagtgaacagagtttgttatccaagcctgacgga
tcttccacttttgttcaaggtgatactagtatcctggctggagtttatggaccagctgag
gttaaagtcagtaaggaaatctatgaccgagctactgtagaggttcttatccagcccaaa
atggggctcccaggagtgcgagagcgtgcgagagagcagtgtgttcgtgagacgtgcgag
gccgctcttctgctgacgcttcatcctcgttcttctgtcacagtcatcctgcaggtcatc
cacgatgatggctctctgctgtcgtgctgtctgaacgctgcctgtatggctctaatggat
gccgggctgcccatgagccaccttttttgtagtgtgacctgtgctattagcaaagaaggc
cagataatcattgatcccacggctcggcaggagaaggaatgtcgagcattgttaacattt
gctattgatagcgctgagtgcaatgtcttgatgtcatcgaccacaggctctttttcagtc
caggagctgcagcagtgcatcgcaatcagtcaaaaggcttctgaacaaatcttccagttt
tatagggattctgtcaaacggcgatattcaaagataaaataa
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