Cyprinus carpio (common carp): 109110361
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Entry
109110361 CDS
T05134
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109110361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109110361
03036 Chromosome and associated proteins [BR:
ccar03036
]
109110361
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109110361
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109110361
mRNA degradation factors
5'-3' decay
Decapping complex
109110361
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109110361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109110361
NCBI-ProteinID:
XP_042630848
Ensembl:
ENSCCRG00000030582
UniProt:
A0A9R0BD74
LinkDB
All DBs
Position
A18:6529458..6543934
Genome browser
AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGGGSQTTQPAQVKPSSTVNNGNSQPA
PTANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQVESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALGIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMIVLDEADKLLSQDFVQMMEEILSYLPKQRQILLYSATFPLSVQKFMNTHLQKPYEIN
LMDELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggaaaatccagtgattctgggactatcaaatcaaaatggccaa
atgcgaggctctgtgaagccagcaggtggtcctggaggaggtggaggggggtcccaaaca
acgcagccagcccaggtcaaaccctccagcacagtcaacaacggcaactcccagcctgca
cccacagccaacactatcatcaagcctggggatgactggaagaagaatctaaagcttcct
ccgaaggatttgcggatgagaacttcagatgtgacggcaaccaagggaaacgagtttgag
gattattgcctgaaacgggagctgcttatgggcatctttgaaatgggctgggagaaaccg
tcacccatacaggtggagagcattcccattgcgttgtctgggagggacattcttgccaga
gccaagaacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacagcatacaagcgttgggtatcgtgcccactagagaactggctctacag
gtgagccagatatgtattcaggtcagcaaacacatgggcggggtcaaggtcatggcaaca
acaggtggaaccaacctccgtgatgacatcatgagacttgatgaaacagtgcatgttgtc
attgccactccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaa
gtacagatgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatg
atggaggagattctgagctatttgcccaaacaaaggcaaattttgctgtattctgccacc
ttcccactgagtgtgcagaagttcatgaacacccatctgcagaagccctatgagataaac
ctgatggatgagctgaccctgaagggggttactcagtattacgcctatgtaaccgaaagg
cagaaagtccattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcacagcgagtggagctcctggcaaagaagatctctcagcttggatac
tcgtgtttctacattcacgccaagatgagacaggaacacagaaaccgtgtgtttcacgat
ttcagaaatggcttatgtcgaaatctcgtctgcactgatctctttacaagaggaattgat
atacaagctgtgaatgtggtgatcaactttgatttccccaaacttggggagacgtacctt
catcgcattggcagatcgggccgatttggacacttaggtctcgccattaacttgatcact
tatgatgaccgctttaacctgaaaggtattgaagaacagctgggtacagaaatcaagccc
attcccggcagtattgataagagtctgtatgtggccgagtaccacagtgagagtggagag
gaggttaaactgtga
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