Cyprinus carpio (common carp): 109111035
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Entry
109111035 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109111035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109111035
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
109111035
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
109111035
NCBI-ProteinID:
XP_042581073
Ensembl:
ENSCCRG00000038078
UniProt:
A0A9Q9WCW1
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All DBs
Position
B5:complement(27821144..27833656)
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AA seq
502 aa
AA seq
DB search
MIAGVKRERDVDEDEEEEVRVKIGRSHGIEDKRSRHCPYLDTINRSVLDFDFEKLCSISL
SHINVYACLICGKYFQGRGQKSHAYIHSVQFTHHVFLNLHTLKFYCLPDNYKIIDSSLED
ITTNISDFLXPTFTKQHIAGLDKHGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALS
NVPPLRNYFLEEDNYCKIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVV
LCSKKTFQITTQGDAVDFLSWFLNALHGALGGTKKKTSIVTKAFQGSMRIFSKKLPHPDL
PAEEKEALLLKDEYQEKMSESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFNGN
NEKEYKTYKENFLKRFQLIKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLT
EEAQATEKFTTYNLVANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVIDILPQMITLS
EAYIQIWKRQDKDEGAESHTGA
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcaggcgtgaaacgggagagggatgttgatgaagacgaagaggaagaggtgcgt
gtgaaaattggacgttctcatggtattgaagacaaaagaagccgtcattgtccttatctg
gacacgatcaacaggagtgttctggattttgactttgagaagctttgttcaatctctctc
tcacacattaatgtgtatgcctgtctgatctgtgggaaatatttccaaggtcgaggtcag
aagtctcacgcgtacatccacagtgttcagttcacacaccatgttttcctgaatctccac
acgctaaagttttactgcctgccagataattataagattattgactcctcattagaggac
attacgactaatatctctgattttttgtgacccacattcaccaaacaacacatcgctggt
ttggataagcatggaaagctgtacagagcctatgatggcactacctatctgccaggaatt
gtgggtctcaataatatcaaggccaatgactatgctaatgtggttttgcaggccctgtca
aacgtgccgcctctacggaactacttcctcgaggaggacaactattgcaaaatccgcagg
ccgccgggtgacataatgtttctgttggtgcagcgctttggggagctcatgcgcaagctc
tggaacccgcgcaacttcaaagcccatgtgtcgccacatgagatgctgcaagctgtggtg
ttatgcagtaaaaagacctttcagatcactacacaaggggacgctgttgactttctgtcc
tggtttctcaatgcattgcatggtgctttaggtgggacaaagaagaaaacatccatcgtc
accaaggcatttcaggggtccatgcgaatcttctcaaagaagcttcctcatcccgatttg
cctgcagaagagaaagaagcccttctgcttaaggacgagtaccaggagaagatgtcggag
tccaccttcctgtacctgacgctggatctgcccaccgcacctctctacaaagatgagaag
gagcagctcatcattcctcaggttcctctctttaacatcctggccaagttcaacggaaac
aatgagaaggagtacaagacatacaaagagaactttctgaaaaggttccagctcatcaaa
cttcctccgtacctcatcttctgcatcaagcgattcacaaaaaacaacttctttgtggag
aagaacccaactattgtcaacttccctatcacgaatgttgatttgcgtgagtacctgaca
gaagaggcgcaggccacagagaagttcaccacctacaacctggtggccaatgtagttcac
gatggaaaacccacagaagggtcctacaggattcatgttctgcatcatggcacagggaag
tggtacgagcttcaggacctgcaggtgattgatatccttccacagatgatcacgctctca
gaggcgtacatacagatttggaagagacaagataaagatgagggagcagaaagccataca
ggagcatag
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