Cyprinus carpio (common carp): 109111154 Help Entry 109111154         CDS       T05134                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism ccar  Cyprinus carpio (common carp) Pathway ccar03018   RNA degradation Brite KEGG Orthology (KO) [BR:ccar00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     109111154  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccar03019]     109111154 Enzymes [BR:ccar01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      109111154 Messenger RNA biogenesis [BR:ccar03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      109111154   mRNA degradation factors    3'-5' decay     Ski complex      109111154 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N MTR4_beta-barrel DEAD Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk DUF3516 DUF5958 HTH_23 Motif Other DBs NCBI-GeneID:  109111154 NCBI-ProteinID:  XP_042600636 Ensembl:  ENSCCRG00000013648 UniProt:  A0A8C2GRZ5 LinkDB All DBs Position B19:complement(7465558..7485904) Genome browser AA seq 1247 aa AA seqDB search MDKIGLPRLGADDLPLSLLEMGCSGRFELITHPLPKNRPLPPHSTLPHGLPPTCLDLKTE VEKRFLRDPAWLPVHDVDDAFHKFLKISGRDREVESLLHCSLSPLHSGLSVVRDPTTGLL LDFTEVLLEDTALSAKNSLSLQRQPGPPSESLRGSNTNYPFLPAGMEELTLEQIKKKSEL EEDIDFEKDLLTVPPGLKAGVDFSDKEAKSTKSEVNLLSLLSTFDDVIDALPEEKEGVSP KEETVKLPRTNSLEELGIKDSGSSASNTVLLSEQKKKPQQEDKGDHKKWAVPVDITSPCD DFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI RDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRP IYVISTVKRPVPLEHYLYTGNSTKTQKELFLLLESTGNFLTKGYYAAVEAKKERTSKHAQ SFGTKNVSQHNTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSLDLTS SIEKSEIHSFLQKSLTRLRGGDRQLPQILSMRDLLKRGIGVHHSGILPILKEIIEMLFSR GLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATG TVIILCKAGVHDMGELHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSEN HRDTQAHEKRISELRNTLSSLRPLDTEGQLSDILSYYHTITELRITTETLQRAVLESVNG LKALSVGRVVIVNNGQHHNALGVILQVSNDAVNRMFTTLIICEKGKEEAAGDDQSNKAFH PIYSTSLFIPEGPCSHTVRKLKSQDISAITTRTLKVIPERIIDNYNKRQQPRFRLDPPGQ AISTATQELLRLAEANPNGITTLDPVNDLHLKGVDVVEGVMRHRVLQDCLKDFHCIHSPT FTEQFARVQERMCVQEELDKLLFLVSDQSLTLLHEYHQRIKVLEALQYVDSTGAVQLKGR VACQISSHELLLTELLFENTLSPLAPEESAALLSCLIFTQNTQIDPHITSTLQEGINQVL NVAQRIGELQRDCGIAQTAEDFVAQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTIVRC IQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH NT seq 3744 nt NT seq  +upstreamnt  +downstreamnt atggacaaaataggtctgccccggctgggtgcggatgatctgcccctgtctctgctggag atgggctgctcggggagatttgagctcatcacacaccccctgcccaaaaacagacccctg cctccacacagcacgcttccccatggcctccctcctacttgtctggatctgaaaacagag gtggagaagcgttttctgcgagaccctgcttggctcccggtacacgatgtagatgatgcc ttccacaagttccttaagataagtgggcgagacagagaggtggagtctctcctgcactgc tcactgtctccactgcactccggtctgtctgtggtcagagaccccaccaccggcctgctg ctggacttcactgaggtgttattagaagacacagcattgtctgccaaaaattctctctca ttgcaaagacagcctggacccccgtcagagagcctgagagggagtaacacaaactatcca ttcctgccagctggaatggaagaactgacgttagagcagattaagaaaaagtccgagctg gaagaagacatcgactttgagaaagatctgttgacggttcctcctgggctgaaggctggc gtggacttcagtgacaaagaagccaaaagcacgaagagtgaggtgaacctgctgtccctc ctgtcgacctttgatgatgtcatcgacgctctgccagaggagaaagagggggtctctccg aaagaggagactgttaaactgcccagaacgaacagcctggaggagctgggaattaaggat tcaggcagctctgcttcgaacacagtgctactgagtgagcaaaagaagaaaccgcagcaa gaagacaagggagaccataaaaaatgggccgttcctgtggacatcacctcaccctgtgac gacttctacaagcgaatccccgatccagccttcaagtatcccttcgagctggacgtgttt cagaagcaggctattctccggctcgaagctcatgactctgtctttgtcgcggctcacaca tcagccggcaagaccgtggtggctgaatacgcaattgcactttcccagaagcacatgacc aggaccatttacacatcccccattaaggccttgtccaatcagaagttcagagacttcaag accacgttcggtgacgtgggacttttgactggagatgtccagctgagccctgaatcctcg tgtctcatcatgaccacggagatcttgagatctatgctctataacgggtccgaggtcatt cgagatctggaatgggtcatttttgatgaggttcactatatcaatgatgcagagagggga gtggtgtgggaggaagtgctcatcatgttgccggagcacgttagcatcatcttgctgagt gccacggtgccaaacgcagtggagttcagtgaatggatcgggcgtatcaagaagcggccc atctatgtgatcagcacagttaagaggcctgttcctctcgagcactatctgtataccggc aacagcaccaagactcagaaagagctcttcctgttgctggaatccactggaaacttcctc actaaaggctactatgccgcagtagaagccaagaaggaacgcactagtaaacacgcacag tctttcggcacaaagaacgtatcgcagcacaacacaacagccagtcaggaccgagccgtg tggcagacgctgctgaactatctgtctcagaggcagcagactccagtggtggcgttcacc ttctctcggacacgctgtgatgaaaacgcccgctctttgacctctctggacctcaccagc tccatagagaagagcgagatccactccttcctgcagaagagcctgaccaggctgagagga ggcgatcgacagttaccgcagatcctgtcgatgcgtgatttactgaagagagggattggt gttcaccacagcggcatcctgccaatcctgaaggagattattgagatgctcttctccaga ggtttagtaaaggtgctgtttgctacggagacgtttgccatgggtgtgaacatgcctgcc agaaccgtcgtgttcgacagcatccgcaaacatgacggcaccggtttcagaaacctgctg cccggtgagtacatacagatggcgggccgtgcaggcagaagaggtttggatgctacaggg accgttatcatcctctgtaaggctggagttcatgatatgggagagctccacgctatgatg ctggggaagccgactgtgctgcagtctcagttcagactgacctacaccatgatcctcaat ctgctgcgtgtggaggccctgagggtcaccgacatgatgaggaggagcttttctgagaac cacagggatacgcaggctcacgagaagagaataagtgagctgaggaacacactgtcttct ctccgtccgctggacacggaggggcagttatctgatatactgtcatattaccacaccatc acagagctgcgcatcaccactgagaccctgcagcgagctgtgctggagtcagtgaatgga ctcaaagctctgtctgtggggagggtggtgatagtgaacaacggccagcatcacaacgca ctaggagtcattctacaggtgtccaacgatgcagtaaatcgcatgttcaccaccctcatt atctgtgagaagggtaaagaggaggctgcgggtgatgatcagtctaataaagccttccat cccatctatagcacttcactgtttattccagagggaccctgcagtcatacggtgcggaaa ctgaagtcgcaggacatctctgccatcacaaccagaaccctcaaagtcattccagagaga atcatcgacaactataataaaagacagcagccacgcttcagacttgatccaccgggtcag gctatttctacagcaactcaggagctcctgcgattggctgaggccaatccaaatggcatt acgacccttgaccctgtgaatgacctgcacctgaagggtgtggatgtggtggagggagtg atgaggcaccgagtgttacaggactgtctgaaagacttccactgcatccactcgcccacc ttcactgaacagtttgcacgtgtgcaggagaggatgtgtgtacaggaagagcttgacaag cttctgttcctggtgtcagatcagtcattgacactgctgcatgagtaccatcagagaatc aaggtgctggaagcgctgcagtatgtggacagcactggggcggttcagctgaagggtcgt gtggcgtgtcagatcagcagtcatgagctgctgctgaccgaactcctgtttgagaacaca ctgagtcctctcgcccctgaggagagcgccgccctgctgtcctgcctcatcttcacgcag aacacccagatagacccgcacatcaccagcacgctacaggagggcatcaatcaagtgctc aatgtggcacagcgtatcggtgagctgcagagggattgtgggatagctcagactgcggaa gactttgtggcccagttcaagttcggcctgactgaggttgtgtactgctgggcgagaggc atgccgtttgctgagattgcccagctgacggatgtgcaggaggggacgatcgtacgctgc atccagaggctggacgaggtcctgaaggaagtgagacaggctgcacgcattgtgggcgac tccgtcctgggcagcaagatggaaagagcctcgctggccatacgcagagacattgtgttc accgcctcactctacacacactga

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