Cyprinus carpio (common carp): 109112226
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Entry
109112226 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109112226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
109112226
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109112226
Spliceosome [BR:
ccar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109112226
Complex C
U4/U6.U5 tri-SnRNP related factors
109112226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
PWI
AAA_30
Flavi_DEAD
wHTH-PRTase_assc
nSTAND3
Motif
Other DBs
NCBI-GeneID:
109112226
NCBI-ProteinID:
XP_042595786
UniProt:
A0A9Q9X5V8
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All DBs
Position
B15:complement(22643247..22655309)
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AA seq
1060 aa
AA seq
DB search
MANLEQWVSDQLHDILGLSDRYVAQFMIGLVQKSSGPQDFVARLQQTGTIDIDQRITAFA
HELYNKAPKKHVAEKPARAVERQVMEMERKNRTYTLLEDSESDGEMARERGKEKKSKDRD
KGKKRKHLRQKRDESPSSSEEDSKKSTKVMDEPKKAAEEEEEEWEREERERLKDLEERDA
FAERVKQKDKDKTRHILERNDKKAYEEAQKNLKMAEEDQKKMLPELRKQSRWQYLSKREQ
EKIDDLEAEIKDEEYLFSTQSLTDREKKDLDYKRKVRDLARDYKKAGAKEKEERKNRYYM
PEENRNKSIPQKDMELEFEETPREGGGEQGRWEEARVATATLQFGAREERERRIKEEQEK
YQLILEEEEMINFVSTAITMKGTLSEMESEPELSQAEKQKQSIQEVRRSLPIFPYREDLL
AAIRDHQILVIEGETGSGKTTQIPQYLLEDGYTNGGMKIGCTQPRRVAAMSVSARVAQEM
NVKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHT
DILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAPEA
DYLEACVVSVLQIHVTQPTGDVLVFLTGQEEIEACCELLQERCRRLGSKISELIVLPIYA
NLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESL
IVTPCSRVREASSNNIDLXSRAGRAGRVAAGKCFRLYTAWAFKHEMEETSIPEIQRTNLG
NVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVD
PMLSKMILASEHYKCSEEILTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVL
LNVYTQWVESGYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVELSSCSGDSMPIRK
AVTAGYFYHTARLSKGGYKTVKHQQTVFVHPNSSLFEEQPRWMIYHELVFTTKEFMRQVI
EIESGWLLEVAPHYYKNKELEDSSSKKMPRKQGKAREELG
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggaacagtgggttagtgaccagctccatgacatcctgggtctgagtgac
cgatatgtggctcagttcatgatcggtctggtgcagaagtcttctggacctcaggacttt
gtggctcggcttcagcaaaccggaaccattgatatcgatcaaagaatcacagcgtttgca
catgagctgtacaacaaagctcccaaaaaacatgtggcagaaaaacctgcgcgggcggtg
gaacgacaagtcatggaaatggagagaaagaacagaacctacactcttctggaggacagt
gagagtgatggagagatggccagagaaagaggaaaagagaagaaaagtaaagaccgggac
aaaggaaagaagaggaaacacctcagacagaaacgagacgaaagtccatcgtccagtgaa
gaggacagcaaaaagagcactaaagtcatggacgagccaaaaaaagctgctgaagaggag
gaggaagaatgggagcgggaagagagagagagacttaaagatctggaggagagggatgca
tttgctgaacgagtgaaacagaaggacaaagacaagacgagacacatacttgagagaaat
gacaaaaaggcttatgaggaagctcaaaaaaatctcaaaatggctgaagaggatcaaaag
aaaatgcttccagagttaaggaaacagtcccgctggcagtatctgagcaaaagagagcag
gagaagattgatgacctcgaggctgaaatcaaggacgaggaatacctcttctccactcag
agcctcacagatcgggaaaagaaagatttagattacaagcggaaggtcagagacctggcc
cgagactacaagaaagctggagcgaaagaaaaagaggagagaaagaacagatactacatg
ccagaggagaacagaaacaagtccattcctcagaaagacatggagctggagtttgaagag
actcccagagagggaggtggggagcagggccgctgggaggaggcgagagtggccactgcc
accctgcagttcggggccagagaagagcgggaacgccggataaaggaggagcaggagaaa
taccagctcattttagaggaagaggagatgatcaacttcgtcagcacggccattactatg
aaaggaacactgtcagaaatggaaagtgaacctgagttatcacaagctgagaagcagaag
caatccatccaggaagtgagacgcagccttcccatctttccttacagagaagatcttctt
gctgccatcagagaccaccagatcttggtcatagagggtgaaaccggatctggcaagacc
acccagatccctcagtatctcctggaagatgggtacactaatggaggaatgaagattggc
tgtactcaacctcgaagagtggcggccatgtctgtatcagccagagtcgcacaggaaatg
aatgtcaaattaggaaatgaggtgggctacagcatccgttttgaagactgtacgtcagaa
cgcactatcctgaagtacatgactgacggcatgttactcagagagtttcttacagagccc
gacctcgccagctacagtgtgatcatcatcgatgaggcccacgagcgaacattgcacaca
gacatcctcttcggtctaattaaagacattgcacggttccgccctgatctgaaggttctg
gtggccagcgccactctggacacagagcgcttctcctgcttctttgatgacgcacctgta
tttaggattccaggtcgcaggtttcccgtggatatctactacacaaaggctccggaggcc
gactacctggaagcatgtgttgtgtcagtgctacagatccatgtcactcagcccactgga
gacgtactggtcttcctcacaggacaggaggagattgaagcgtgctgtgaacttctacag
gagagatgtaggagactgggctcgaagatatctgaactcattgttctgcccatctatgcc
aacttgccttcagacatgcaggccaagatcttcaatcccactccgcctggagcacgcaaa
gttgtggtggccacaaatatcgcagagacgtctctcaccatcgacggcatcatctacgtc
attgatccaggtttctgcaaacaaaagagctacaatgcaagaacaggaatggaatctctc
attgtcactccctgttcacgagtaagagaagcttctagcaacaacattgatctgtaaagt
agagcaggtcgtgcaggaagagtggctgctgggaaatgttttaggctgtacactgcctgg
gcctttaaacatgagatggaagagacctccatccctgagatccagagaacaaacttaggc
aatgtggttctgctgctcaaaagtctcggcataaatgatctgattcatttcgacttcatg
gatcctcctcctcacgaaacactggtgttggcactggagcagctttacgccttgggcgcc
cttaaccacctcggtgaactcactaagctcggccgaaggatggctgaacttcccgtggac
cccatgctgagtaaaatgattctggcttctgaacattataagtgctctgaggagattcta
accatagcggccatgctgtcggtgaacaactccatcttctaccgccccaaggacaaggtg
gttcatgccgacaatgctcggatgaactttgtggtaccaggaggagatcacatggtgctg
ctcaatgtatatacacagtgggtagagagcggttactccactcagtggtgcttcgagaac
ttcatccagtttcgctccatgaagagagctcgagatgtccgtgatcagctggaggggttg
atggacaggatcgaagtggaactatccagctgcagcggtgacagtatgcccattcgcaag
gcggtgactgcgggatatttctaccacacggcacgcttgagtaaagggggatataaaaca
gtcaaacaccagcagactgttttcgtccatcccaacagctcactcttcgaggagcagcca
cgttggatgatctaccacgagctggtcttcaccaccaaagagtttatgagacaggtgata
gagattgaaagtggctggctgctggaagtggctcctcattattataaaaacaaagaactg
gaggacagcagcagtaaaaagatgccccgcaaacaaggcaaagcccgtgaagagctgggc
tga
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integrated database retrieval system
