Cyprinus carpio (common carp): 109112284
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Entry
109112284 CDS
T05134
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03013
Nucleocytoplasmic transport
ccar03015
mRNA surveillance pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109112284
09122 Translation
03013 Nucleocytoplasmic transport
109112284
03015 mRNA surveillance pathway
109112284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109112284
03041 Spliceosome [BR:
ccar03041
]
109112284
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109112284
Spliceosome [BR:
ccar03041
]
Complex C
Other components
EJC/TREX
109112284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
109112284
NCBI-ProteinID:
XP_042574617
UniProt:
A0A9Q9W0J8
LinkDB
All DBs
Position
B2:complement(22121924..22142492)
Genome browser
AA seq
1738 aa
AA seq
DB search
MADLEDVTLDGRPLHSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQKTSTHH
IGLQPNSRIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAAETDGTDHEDHTEANDSIC
AATNQDVAPSLVDQHKGDTAVAGGFGVSASESDELREKEMPGQPSPSAPAQPGAIASLSV
RVVGERGPTSSHVPADSDDDSEGGDDNDDEEEEWNASAQRSRRAQPPKSQPVRERSGGSQ
QQQQPPPQHIPLLSQQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGEPPGRQRMSSSSSS
GSSSSDSRSSSPEPAGDSTERRPGPLTLLARKMASEGAFSGAGKHDREGMDGQRSHHEGV
VSAVTHTANAASVLSYPSSVICNQGVSVVRTAAVEESDGMKQDEGSHLLWEQENKKRERQ
REQERLKALEKEKALEKERERVLERERQEREEALKRERALQREREEKEKALQRESEEREK
LEREQALERERLEREQALERERQEKERLERERQEALEQERLERERLEKERQEQEKALERE
RLEKERQEREQALERERLERERLEKESLEREQALERERLERERLEKERQEREQALERERL
ERERLEKERQEREQALERERMERERLEKKRLEREQALERERLEKERLEKERQEQALERER
LEKERLEKERQEREQALERERLEKERLEKERQEQERQEKEQALERERQEKERLEREQALE
RERLEREAALEKERQEMERAKEQQRLEKEKAEKERHEREAALERKRQERERLEKEKALEE
ERLQKEQALEREREAQRKAEEEREETLEKEKEQQERALKEEQQRALEERERLLEQKRVQE
EKEKALKLEKEEEHEKERESRLPPWKRGRDIGGLSYLAAQPASLESPMEKPDESETGEPQ
STGKDARSTEPVPQQSPTLATPLSPQSSSKKSRFLRDAPVRTPLPSSPTSVLKRPRTFSD
SPMPQAPSIPLGSKPEEKDASQAPQTSVLASASNELESKTPEVPAKQHAQQEEKKMEMSE
NSEASKDTKPNTLRRVEDEEKPLSEEKKRGREREKKQGEKKERKSSSSSESSSSNSDSGS
SSSSCSSSSSSEEEEEKSHSTSGGRKSKEVQKESTSQATEKVVAEKPPTAQRKKRVFTEQ
EEKDTGNEDVIQTKKPCLELQDEKVTRGRKDDIEEDDTNKDTTSSEVKEAVMAEPEKVPE
NSEESTMPKTFSARRISLGSSKQSPGVVSSEGEAEAAGSAGAGRKRRWGSSTAVTAKKPS
ISITTDSLKSLIPDIKPALGQEAVLDLHPEEMHLSGEEEGGERGDQDLKIRRTVTQVVPS
DTQENGQKESKRSEHEDEEERSEGQDRLSQEEKIEGSIQVSMETEPSSPGRDVDMKTVTP
SDTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKLSNIVHICNLVRPFTLGQLKELLN
RTGTVVEEGFWIDKIKSHCYVTYSSVEEATATRTALHGVKWPQSNPKFLSVDFCTQEELD
FHRGLGPAGEKPTGEPHGTAAAGPGRPVPLPLLPERDQWAEREREMERRERTRAEREWDR
DKVRDFSKSGEEREAGARRSRSRDRERRRKERGKSKEKKTDKKEKGPEDPPAKLLDDLFR
KTKAAPCIYWLPLTEEQAAQRAAARAERMREREKRRKEMEEEDKKREEERRERMKTGGAT
AGEGERDRDRERDRERGREREREGDKRKEGYRRPGGNSASGSRRSRSRSDPPLKDRRH
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggaggccgctccattcgctccgggtggca
gatttgaaggcggcattggaagagagagggcttccgaaaagcggacagaagaatgctctc
atcaagaggctcaaaggggctctcatgctggagaaccttcagaaaacctccactcatcac
attggcctgcagcctaactcccggattggggaggaaatgagtcagaacagcttcattaaa
cagtacctggccaaacagcaagagcttctgaggcagcgtttggagaaggaagcacgagag
gcagctgaaactgatggaacagaccatgaagaccacacagaggccaatgacagtatttgt
gctgccactaaccaggatgttgctccctccttagttgaccaacacaaaggagatacagca
gtggctgggggatttggggtgagtgcgagtgagagtgatgagctcagagaaaaagaaatg
cctgggcagccgtccccctctgcacctgcccagcctggcgcaatagcctctttgtctgtg
cgggttgttggtgaaagaggaccaacatcaagccatgtaccagctgacagtgatgatgac
agtgaaggtggggatgacaatgatgatgaggaggaggagtggaatgccagtgctcaacgg
agtcgtcgagcacagcctccaaaaagccagccggtgagggaaagatctggtggctcgcag
caacagcagcagccgcccccccaacacatacctttactatcacagcagctcagacagccc
actcctcccccatcccctcctcctgaactctcttttccactcccagacacccctaaacag
agcccccctagtcccggagagcccccaggtaggcagcgtatgtctagctcttcgagctct
ggtagttccagtagtgacagtcgtagcagtagccctgaaccagcaggcgactccacagaa
cgcagaccaggcccactgaccttattggcacgcaagatggcgtctgagggagctttctct
ggggcaggaaagcatgatagggagggaatggatggacagagaagccaccatgagggagtt
gtgtctgcagttacccacacagctaatgcagcatcagttttgtcataccctagttcagtg
atctgcaaccaaggtgttagtgttgtaagaacagcggcagtggaagagagtgatggtatg
aagcaggatgaaggtagccatcttttatgggagcaagaaaacaaaaagagggaaaggcaa
agagaacaagagagactgaaagccctagaaaaggagaaggcattggaaaaagagcgagaa
cgggttttggaacgggaaagacaggaacgagaagaagctctaaaacgggagagggcttta
cagcgagaaagggaagagaaagaaaaggccttacagcgggagagtgaagagagggagaag
cttgaaagagaacaagcattggaaagagaacgactcgagagagaacaagctctggaacga
gaaaggcaagaaaaggagagactggagagagagagacaggaagctttagagcaggagaga
ttggagagagagagacttgagaaagaaagacaagaacaagaaaaagccttagaaagagaa
agactcgagaaagaaagacaagaacgagaacaagctctagagagggagagattagaacga
gagaggcttgagaaggaaagcctagaaagagaacaagctctagaaagggagagattggag
agagagcggctcgagaaggaaagacaagaacgagaacaagctctagagagggagagatta
gagcgagagcggctcgagaaggaaagacaagaacgagaacaagctctagagagggaaagg
atggagagagagcggcttgagaaaaaaagactagaacgagaacaagctcttgagagggaa
aggctggagaaagagaggcttgagaaagaaagacaagaacaagctctagagagggagaga
ctggaaaaagagcggcttgagaaggaaagacaagaacgagaacaagctttagagagggag
agactggaaaaagagcggcttgagaaggaaagacaggaacaagagaggcaagaaaaagaa
caagctctagagagggagaggcaggagaaagaaaggctagaaagagagcaagctttggag
agagagagactggaaagagaagctgcattggagaaagagagacaagaaatggaaagggcc
aaagaacagcaaaggctggagaaagagaaggctgaaaaagaaagacatgaaagagaagcc
gctctggaacgcaagaggcaagagcgagaaaggcttgagaaagagaaagctttggaagag
gaacggttgcagaaagaacaagctcttgagcgtgagagagaagcacagaggaaagcagag
gaggaacgagaggaaactttggaaaaggagaaagagcagcaggagagggctttaaaagaa
gagcagcagagagccttggaggaaagggaaagacttttggagcagaaaagagtgcaggag
gaaaaagaaaaggctttgaaacttgaaaaagaggaagaacacgagaaagaaagagaaagc
cgtcttcctccgtggaagcgtggtcgtgatattggtggtctctcctatctagcggcccaa
cctgcttctctggagagtccaatggagaagccagatgagagtgagactggtgaacctcag
agcactggcaaagatgctcgatctacagagcctgtcccacaacagtcacccacacttgca
acaccactatcccctcaatcttcttcaaagaagtcccgcttcctcagagatgctcctgtg
agaactcctctcccttcctctccaacgtctgtgctgaagagacctcgtactttctcagac
agccccatgccacaagccccctcaattccattaggatctaagcctgaggaaaaagatgcc
tctcaggctcctcaaacatcagtccttgcttcagcctccaatgagcttgagagcaagacc
ccagaggtgcctgccaaacaacatgcacaacaagaggaaaagaagatggagatgtcagag
aatagtgaggcaagcaaagacactaaacctaatacactcagaagagtggaggatgaggag
aaacctctttcagaggagaagaaaagaggaagagaaagggaaaagaagcagggggagaag
aaagaaagaaaatcatcatcctccagcgagtcctcctcatccaactcggattctgggtct
tcatcctcctcatgctcctccagttcatcatcagaagaggaggaggagaaaagtcattct
acttcaggtggtaggaagtctaaagaggtccagaaagagtctacatctcaggccacagaa
aaagttgtggctgaaaagcctcctacagcccaacgcaaaaaacgagtcttcacagagcag
gaggaaaaagacacgggcaatgaggatgtcattcaaaccaagaaaccctgccttgaacta
caagatgagaaggtaacaaggggaagaaaggatgatattgaagaagatgacactaacaaa
gacactaccagtagtgaggtgaaggaggcggtcatggcagagcctgagaaggttccagag
aacagtgaggagagcaccatgccaaagaccttctctgcccgaaggatttctcttggcagc
agcaaacagtctcctggggtggtgagttcggagggggaagcagaggccgcaggcagtgct
ggcgctggcaggaagaggagatggggctccagtacagctgtcactgccaagaaaccctcc
atcagtatcaccacagactctttgaagtctttaataccagacatcaagcctgccttgggt
caggaggctgtattagacctgcatccagaggagatgcatctctctggggaggaggaagga
ggagagaggggcgaccaagacctgaaaattagacgaactgtaacacaggttgtgccctct
gacacacaagagaatggacagaaagaatctaaaagaagtgaacatgaggatgaggaagaa
agaagtgaagggcaggatagacttagccaggaggaaaaaattgaaggctcgattcaggtt
tccatggagacggagccatcgtcccctgggcgagacgttgatatgaagacagttactccc
agtgacacactgattcgccgatccattagccagcagaagtctggtgtgagtatcaccatt
gatgacccggtccgcacagccaaacagccctctcctcctcgtggcaagctgtctaacatt
gtccatatctgcaacctggtgaggccgtttacactggggcagttgaaggagctgttaaac
cgcacagggactgtagtagaggaaggtttctggattgacaagattaaatctcactgttac
gtcacatactctagtgtggaagaggcgacggccactcgtacagcactacatggagttaag
tggccccagagtaacccaaagttcctcagtgttgatttctgcacgcaagaggagttggat
ttccacaggggtttgggtccagcaggagaaaagccaacaggggagcctcatgggacggca
gccgctgggcctggccgtccagtacccctgcctctccttccagagcgtgatcagtgggca
gaacgtgaaagggaaatggaaaggagggagagaacgcgtgcagagagggaatgggacaga
gataaagtgagagacttcagcaaatctggagaggagcgggaagctggggccagaagatcg
cgttcacgagatcgcgaaaggcggcgcaaggaaagaggaaagagcaaagagaagaaaacc
gataaaaaggaaaaaggaccagaggatccacctgctaaactgctggatgacctcttccgc
aaaaccaaagcggctccgtgcatatactggctccccctgactgaggagcaggcggcacaa
agggcagcggctcgtgctgagcgcatgagggaaagagagaagagaaggaaggagatggaa
gaggaggataagaaacgtgaggaggagcggcgagagaggatgaagactggtggggccact
gcaggggaaggtgagagagaccgtgatagagaacgagaccgagaaagaggtcgagaaagg
gagcgagagggggataaacggaaggagggataccgcaggcctggtggaaacagtgcaagt
gggagcaggaggtcacgaagccgcagcgaccctccgctcaaagatcgacgacactaa
DBGET
integrated database retrieval system
