Cyprinus carpio (common carp): 109112355
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Entry
109112355 CDS
T05134
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109112355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109112355
03036 Chromosome and associated proteins [BR:
ccar03036
]
109112355
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109112355
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109112355
mRNA degradation factors
5'-3' decay
Decapping complex
109112355
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109112355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
109112355
NCBI-ProteinID:
XP_042601138
UniProt:
A0A8C2E0L5
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All DBs
Position
B19:complement(20083139..20090065)
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AA seq
489 aa
AA seq
DB search
MATKMENSGPAVMGLNTHNRQLLGQPRAPSQLGPQTVSAQPGKEPMVTQKPANASQEGPG
IRFGDDWKNSLQLPAKDTRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
SIPIALSGRDILARAKNGTGKSGAYLIPLLERIDIKKDHIQAIVIVPTRELALQVSQISI
QISKHLGGVNVMATTGGTNLRDDIMRLDEEVHVVIATPGRILDLLKKGIAKVDKVQMMVM
DEADKLLSQDFVVIIEDIIGFLSKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELT
LKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIH
AKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRS
GRFGHLGLAINLITAEDRFNLKTVEDQLMTDIKPIPGSIDKSLYVAEFHSVSSDCEAEEP
EPGEGSEAH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaagatggagaacagtggcccggctgtcatgggattgaacacacacaacagg
cagcttttaggacagcctagagccccctctcaattaggaccccaaactgtgagtgctcag
cctggaaaggagcccatggtgacccagaaaccagccaatgcatctcaggaaggacctggt
atcaggtttggtgatgactggaaaaacagcctacagctccccgctaaggacactagagtc
aaaacttctgatgtgactgcaaccaaagggaatgagtttgaggactactgtctaaaaaga
gagctgctgatgggcatttttgagatgggctgggaaaagccctcccccattcaggaggag
agtattcctattgccctttctggccgcgatatactggctcgtgccaaaaacgggaccgga
aagagtggagcatacctgatcccccttctggagagaattgacataaaaaaggatcatatc
caagccattgtgatagttcccactcgtgaactggctctgcaggtcagtcagatcagtatt
cagatcagcaagcacctgggtggtgtcaacgtcatggcaaccacaggtgggaccaaccta
cgagatgatatcatgcgcctggatgaggaggttcatgttgttattgcaacacctggcaga
attttggacttgctaaaaaagggcatagccaaagtggataaagttcagatgatggttatg
gatgaagctgataagctgctctctcaggactttgtggttattattgaggacatcattggt
ttcctttcaaagaacagacagattctgctctattcagccacattccccatcagcgtacag
aagtttatggcaaagcacctgcagaagccctatgagattaatctgatggaggaactgacc
ctgaaaggcattactcagtactatgcttatgtcacagaaagacagaaagtccactgcctt
aacacactgttctccaggctgcagataaatcagtccattatcttttgtaactctactcag
cgtgtggagcttttggccaagaagatcacgcagctgggctactcctgcttctacattcat
gcaaagatgatgcaggaatacagaaaccgtgttttccacgacttcagaaacgggctctgc
aggaaccttgtttgcacagatttattcactagaggcatcgatatccaggcagtaaatgtg
gtcatcaactttgactttcccaagaatgcagaaacatacctgcatcgcattggacgctca
ggcaggtttggacatctgggtttggcaatcaatctcattactgctgaggatcgctttaac
ctgaagaccgttgaggaccagctgatgacggacataaagcccattcctggcagcattgat
aagagcctgtatgtggcagagtttcactctgtgagctctgactgtgaggcagaggagcct
gagcccggcgaagggtctgaagcccattag
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