Cyprinus carpio (common carp): 109112418
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Entry
109112418 CDS
T05134
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109112418
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109112418
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109112418
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109112418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
109112418
NCBI-ProteinID:
XP_042589480
UniProt:
A0A9R0A941
LinkDB
All DBs
Position
B11:2364503..2404293
Genome browser
AA seq
1490 aa
AA seq
DB search
MILSADSRTLLLFVATLVAFLAVVKCQEEDDPDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGAVLCDEIICEELKDCPKPEIPFGECCPVCAADQPPSTGLPGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGPRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFASQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGAPGPQGFQGNPGEAGEPGSSG
PMGPRGPPGPSGKPGEDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGESGATGAKGEAGSPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGSPGAAGPPG
PVGTSGSPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGVPGSAGPSGVPGNPGTDGLPG
AKGSVGAPGIAGAAGFPGPRGPPGPQGATGPLGPKGQSGDPGLAGFKGEAGPKGEIGNAG
PQGAPGPAGEEGKRGPRGEPGALGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGAAG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKAGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEAGKSGDKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQGLQG
PRGLPGTPGTDGHKGAVGPAGTPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGDKGPEG
APGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPPGPAGFAG
PPGADGQPGLKGEQGEGGQKGDAGAPGPQGSSGAPGPQGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGAAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPGEKG
DPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDRG
PPGPVGAPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPTGAPGAPGGTGAPG
PVGPTGKQGDRGEAGPQGPAGSLGPAGARGMPGPQGPRGDKGEAGDSGERGQKGHRGFTG
LQGLPGPPGQPGDQGASGPAGPGGARGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGETG
PAGPPGNPGPPGLPGPPGPGIDLSAFAGLSHPEKGPDPLRYMRADQAAEGNVQNDAEVDA
SLKSLNNQMENIRSPDGSKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAMKVFCNM
ETGETCVYPKPASIPRKSWWTSKGSERKHVWFGEAMNGGFHFGYGDDNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDESTGNLKKALLLQGSNDVQIRAEGNSRFTYTVLEDG
CKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGAHQEFGVDLGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattctaggactttactgctatttgtggcaacactagtcgcattt
ttggccgttgtcaagtgccaagaggaggatgacccagatccaggcagctgcacgcaggac
ggacagttctatagggacaaggacgtgtggaaaccagagccgtgccgcatctgtgtttgt
gacaccggcgcggtcctgtgcgacgagatcatctgcgaggagctgaaagactgtcccaaa
cccgagatcccgtttggggagtgctgtccagtctgtgccgctgaccagccgccctccact
ggcttgccaggtgctaagggacagaagggggaaccaggagacataacagatgtggtggga
ccgaggggaccagccggtcctatgggacccccaggagaacaagggccacgaggagacaga
ggagagaagggggagaagggaagtccagggccccgtggcagagatggtgagccggggacc
cctggaaacccgggccctcctggaccgcctggaccaaacggacctccaggcctcggtggg
aactttgcttctcagatggctggtgggtttgatgacaaagctggaggagcacagatggga
gtgatgcaaggaccgatgggtccgatgggtcctcgaggaccaccaggccccaatggagct
cctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggatcatccggc
ccaatgggtcctcgtggtcccccgggtccctcaggaaaaccaggagaggatggggaagca
ggcaaacctgggaaagctggggaacgtggacctcctgggcctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggttattcaggtcttgatggt
gctaaaggagagtctggagccactggggctaaaggtgaggccgggtctcctggagaaagt
ggcgctcctggaccaatgggcccacgtggtttacctggtgaacgggggcgtcctggacca
tccggagctgctggtgctcgtgggaatgatggctcgcccggcgctgctggtcctccgggt
ccagtcggtacgtctggctctcccggtttcccaggatcccccggtactaagggtgaagca
ggacctaccggagccagaggacccgagggagcacaaggaccccgcggagagtctggcgtc
cccggatctgcaggaccttctggagtccctggtaaccccgggactgatggcctccccgga
gccaaaggatcagtgggtgctcctggtatcgctggtgctgctggtttcccaggccctcgg
gggcctcctggccctcagggagcgactggacctctggggcccaagggacagtctggtgat
ccgggtctcgcagggttcaagggtgaagctggtcctaaaggagaaattggcaacgctggg
cctcaaggtgcccctggccctgctggagaggaaggtaagcgaggacccagaggagagccg
ggtgctcttggacccgtcgggccgcccggagagagaggagctcctggtaatcgaggtttt
cctggacaagatggtctggctggtccaaagggtgctccgggcgagcggggagctgcggga
gtgtcggggcccaagggagccggcggagatccgggccggcctggagaaccgggtctgcct
ggtgcacggggtctgacgggacgcccgggcgatgctggtccacagggcaaagctggtccg
tctggtgctgctggtgaagacggtcggccaggacccccgggccctcagggtgctcgtggt
cagccgggagtcatgggcttccctggacccaagggtggcaatggtgaggctgggaagtcc
ggagacaagggactcgctggagctcctggtttgcgtggtctgccggggaaagacggagag
acgggcgctgccggaccccctggacctgctggtcctgcaggagagagaggagagcagggt
cagcccggaccctctggcttccagggtctgcccggaccccctggcccccctggtgaagga
ggtaaacctggtgatcagggtgttccaggagaagctggggccgcaggggccaccggacca
cgcggtgagcggggtttcccaggagagagaggaggtgtggggccccagggcctccagggg
cctcgaggtcttccaggaactccaggaactgatgggcacaagggtgccgtcggcccggcg
gggactcctggtgctcaggggcctccgggactgcaggggatgcctggagagagagggaca
tctggcattcctggaccaaagggtgaccgaggtgacaacggtgataaaggacctgaagga
gctcctgggaaggacggcgcaagaggtttaacgggtccgatcggtccccctggtcctgcg
ggacccaacggtgaaaagggagaatctggacctgcaggaccgtctggagctgctggtact
cgcggtgttcctggtgacagaggagagactggtcctcctggtcctgctggtttcgctggt
cctcctggtgcagatggacagcctggtctgaagggagagcagggtgaaggtggacagaag
ggtgatgctggtgcaccgggccctcaggggtcttctggagctccaggtcctcagggacca
actggtgtgtctggaccaaaaggggctcgcggtgctcaaggacctcctggtgccacaggt
ttccctggagccgctggtagagttggacctcctggtcccaatggtaacccgggtccggct
ggtgctgctggtcctcctggtaaagacggtcctaagggcgtgcgtggtgacggtggtcct
cctggaagacccggggacgctggcttgcgtgggccggctgggactcctggagagaaggga
gatcctggagaagatgggcctcacggtccggatggccctgcaggtcctcagggtctggct
ggtcagcgtgggattgttggacttccaggacagcgtggtgaaagaggtttccccggcctg
cctggaccctctggtgagcctggtaaacaaggagctgctggaggacctggagaccgtgga
ccccctggacctgtgggagcgccgggtctgaccggacctgctggggagcctgggagagag
ggcaatcccggatctgatggtcctccgggccgagacggttctgcaggaataaagggtgac
cgaggagacactggacccacgggtgctcctggtgctccaggtggcactggcgctcccggt
ccagtcggacccaccggcaaacagggagaccgaggagaggccggaccccaaggacctgct
ggctctctggggcctgctggagctcgaggaatgcctggcccacaaggcccgcgcggagat
aagggagaggctggggattcgggtgagagaggacagaagggacatcgaggattcaccggt
cttcagggtctgcctgggcctcctggccaacctggagaccaaggagcttctggacctgct
ggacccggtggagcaagaggacccccaggccccgttggtccagctggaaaagatggatcc
aatggtttgcctggacccatcggaccccctggacctcgcggtcgttctggagagactggg
ccagccggccccccaggaaaccctggtccccccggtctccctggccccccggggcccggc
atcgatctgtcagctttcgctggtctgtctcatcctgagaagggtccggaccccctgcgg
tacatgagggcagaccaggccgccgaaggtaacgtccagaatgatgcagaggtggacgcc
agtctgaagtccctcaacaatcagatggagaacatccgcagtcctgacggctccaagaag
agcccggcccgcacctgcagggacctgaagctctgccaccccgactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgttgatgctatgaaggtcttttgcaacatg
gagaccggcgagacctgcgtttatccaaaacctgccagtatcccacgcaagagctggtgg
acttccaagggctcggagcgcaaacacgtttggttcggagaagccatgaatggtggattc
cattttggctatggagacgacaacctggcacccaacacagcaagcattcagatgactttc
ctcagactgctgtccacagaggcctcgcagaacctgacctatcactgcaagaacagcgtg
gcctacatggatgagtccaccggaaacctgaagaaagctctgctgctgcaggggtccaat
gatgtgcagatccgagccgagggcaacagccgcttcacatacactgttctggaggacggc
tgcaagaaacacacaggacaatggagcaagacggtcatcgagtacaaatcccagaagact
tcacgcctgcccattgtggacattgcaccgatggatattggaggagctcatcaggagttc
ggagtggacctgggtgccgtctgtttcttgtaa
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