Cyprinus carpio (common carp): 109112424
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Entry
109112424 CDS
T05134
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04137
Mitophagy - animal
ccar04140
Autophagy - animal
ccar04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109112424
04137 Mitophagy - animal
109112424
04148 Efferocytosis
109112424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccar03000
]
109112424
Transcription factors [BR:
ccar03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
109112424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
Hl_ALG44
HLH
Motif
Other DBs
NCBI-GeneID:
109112424
NCBI-ProteinID:
XP_018980901
Ensembl:
ENSCCRG00000011557
UniProt:
A0A9Q9ZMN3
LinkDB
All DBs
Position
A13:18248637..18261642
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AA seq
721 aa
AA seq
DB search
MDSFAPGKKRVSSERRKEKSRDAARCRRGKEAEVFYELARELPLPHSVTSNLDKASVMRL
ALSYLRLRKLLKTDVLDVESELDSRWNSSYLKALDGFLMVLSADGDIVYLSESVSKCLGL
PQIDLTGHSVFEFTHPCDHEELREMLAHRTGLSKKAKEQHTNRSFLLRMKCTLTSRGRTV
NVKSASWKVLRCSGHIHTTDCIKKGVCEEKNVRSAYLVLICESIQHPANIEAPLDSRTFL
SRHTLDMRFTYCDERIKELLGFDPVDLLHHSVYEYYHALDSVHMTKAHHNLFVKGQVCTG
QYRLLAKAGGFAWAETQATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNSTNIK
QEQEEHHKESLRAEVSVEDLKEDAKAKDEQKEECVREELHDSLKGKPEALTVVDPILTLD
ITSTDSVISVLTEIPLYNDVMLPSSSALLPLSPLSLNDDDASTALLQPDDFPFSQSPAPD
SSRSQVDLPVDSELSDQLKPDHVERLFSMDIESKTPFNTQGVGLDLEMLAPYIPMNDDFQ
LQTFSPAESMCSSPGSVLELTPSSSTQTAPALPAAPLDLVSCDTISQNIRTTNQGNSREI
IQDSDISSKCQTNPKLLKRKLETIPLSEAIRLDSVLQVVNDFPEKKIRKSDASSSEGLCH
ATILLLPSDVARRLLSRSEGGAIMMPFPQITRYDCEVNAPVTGRQHLLQGEELLCALDLV
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggattcattcgcacctgggaaaaaaagggtgagttcagagcgaaggaaggagaaatcc
agagatgcggcgcgttgtcggagaggaaaagaggcagaggtgttttatgaactggccaga
gaactgcccctcccccacagtgtcacctctaacctggacaaagcatcggtcatgagacta
gcactcagttacctgcgcctgcgtaaattactgaaaacagatgtactggacgtggagtct
gaattagactctcggtggaacagttcatatctgaaagctctagatgggtttctcatggtt
ctttctgctgatggcgacatcgtctacctgtcagagagtgtcagcaagtgtctgggcctt
cctcagatcgaccttactggacacagtgtgtttgagtttactcatccatgtgaccatgag
gagctcagagaaatgctggcacacaggactggtttgtctaagaaagcgaaggagcagcac
acaaacagaagttttctgttgaggatgaaatgtacactgaccagcagagggcgcactgtc
aatgtcaaatctgcctcctggaaggtgctgcgctgttcgggccatatccacacaacagat
tgcatcaagaagggggtgtgtgaggaaaaaaatgtgcgttctgcgtacctggtgctcatc
tgtgagtctattcaacacccggcaaacattgaagctcctctggactctagaacctttctc
agccgccacactttagatatgcgcttcacctattgcgatgagaggatcaaagagctgttg
ggttttgatccagtggatctgttgcaccattctgtgtatgaatactatcacgcactggat
tctgtccacatgaccaaagcacaccacaacttgtttgtgaagggacaagtgtgtactgga
cagtaccggctgctggctaaagcaggagggtttgcttgggcagagactcaagccactgtg
atctataacagtaaaaactcccagccacagtgtgtggtctgtgttaactacatcctcagt
ggcattgaacagcccaaacaaatcctgtcccttcaacaaaccaacagcacaaacataaaa
caggaacaagaagaacaccacaaggagtcactcagggctgaagtgtctgtggaagatttg
aaagaggatgcaaaagcaaaggacgagcagaaagaagagtgtgtgagagaggagctacac
gacagcctgaaggggaagccagaagcactgactgtagtagaccctatcctcacactggat
atcaccagcacagactccgtgatctctgtgttgacagaaattcctctctacaatgatgtt
atgttgccctcttcaagtgccctgctacccctctcacctctctccctaaatgatgatgat
gcctccacagcccttctacaacctgacgacttccccttctcacaatctccggctcctgat
tcttccagatcccaggttgatctccctgtggattcagaattaagtgaccagctaaaaccg
gatcatgtggaaagactattttccatggatatagagtccaagacaccctttaatacacag
ggcgtgggtttggatctggagatgttagctccatacattcccatgaatgatgatttccag
ctgcagactttttctccagctgagtcgatgtgttccagcccaggttcagtgcttgaactg
accccctccagcagcacacaaactgcccctgctctcccagcagcccctctagacttagtg
tcctgtgacaccatttcacagaacattagaaccacaaaccagggcaacagcagagaaatt
attcaagacagtgatatttcttctaaatgtcagacaaacccaaagctactcaagaggaaa
ctggagaccatacctttgtctgaagcaataaggctggattctgtgctgcaggtggtgaat
gattttccagagaaaaagatcagaaaatcagatgcttcatcatcagaagggctttgtcac
gccacgatactgttgctgccatctgatgttgcgagaaggttattgagcagatcagagggt
ggagccataatgatgcccttcccccagattactcgttatgactgtgaggtaaatgcacct
gtgactgggcggcagcacctgctacagggggaggagctactgtgtgccttggacctagtt
atttaa
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