Cyprinus carpio (common carp): 109112775
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Entry
109112775 CDS
T05134
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109112775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109112775
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109112775
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109112775
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109112775
U7-dependent histone pre-mRNA processing factors
109112775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
RMMBL
Lactamase_B_6
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
109112775
NCBI-ProteinID:
XP_042633761
Ensembl:
ENSCCRG00000050211
UniProt:
A0A9Q9Z9E0
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All DBs
Position
A20:complement(16152359..16157161)
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AA seq
602 aa
AA seq
DB search
MVFTEDKFQREDFHDPCHQSHLPLVAFRLCESQNISADDMLYTETDLEESMDKIETINFH
EVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDIL
ITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHP
ELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPFVFKHISNLKSMDHFDDIG
PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK
LPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEV
HIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKSVQGQRVSGILVKKNFSYHILAPSDLS
NYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHLTGDVEEIEISEKSTLRVFNSITVVHDQN
VVLLEWFANPLNDMYADAVTTVVLEVQSNPKAQKVVQPQEKKVDVNVFQSRLLKMFQDMF
GEECVDFKDKNCLTVSVDGKTAFINLETRTAEYEEANSEDDSLREMVELAVQRLYEAMNP
VM
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggtttttacagaagacaagtttcaaagggaggactttcatgacccatgccaccaaagc
catttaccgctggttgctttcagactatgtgaaagtcagaacatctcagcggatgatatg
ctgtacactgagactgatctagaagaaagcatggacaagattgagaccatcaacttccat
gaagtgaaagaggtggccggcatcaagttctggtgctaccacgcaggtcatgttttggga
gcagccatgttcatgattgagattgcaggagtgaagctactgtacacaggagatttctcc
cgtcaagaagacagacatctcatggcagctgagattcccagcgtcaaaccagacattctg
atcacagagtctacatatggcacgcacatccatgagaagagagaggagagagaggctcgt
ttctgtaacacggtccatgacatagtgaaccgtgagggccgctgtctcatccccgtgttt
gctttgggtcgagcccaggagctgctgctcattttagatgaatactggcagaatcaccct
gaactccatgacattcccatctactatgcctcatccctggcaaagaagtgcatggctgtg
taccagacctatgtgaacgccatgaacgacaagatccgcaaggccatcaacatcaacaac
ccgtttgtcttcaagcatatcagcaatcttaagagcatggaccatttcgatgacattggc
cctagtgtggtgatggcatctccaggtatgatgcagagcggtctttccagagagcttttc
gagagctggtgcaccgacaagaggaacggtgtcatcatagcaggttattgtgtggaagga
acgctcgccaagcatatcatgtctgagccagaggagatcaccaccatgtcaggacagaag
cttccgctgaagatgtccgtggactatatctccttctctgctcatacggactaccagcag
accagcgagttcatccgagctctgaaacctcctcatgtgatcctggtccatggagagcag
aatgagatggctcgactgaaagccgccctgattagggagtatgaggacaatgatgaggtt
cacattgaggtgcataaccctcgtaacactgaggccgtcacgctgaacttcagaggagag
aaactggcgaaggtgatgggctctcttgcggataagaagagtgtgcagggtcagcgggtc
tctggcatcctggtgaaaaagaacttcagttatcacatcctcgccccctctgacctctcc
aattacactgatctggccatgagcacagtgaaacagactcaagccattcccttcaccggc
ccttttcccttgcttttgagtcagctacggcacctgacaggtgatgtggaggagattgag
atctcggagaagagcacgttgagagtctttaacagcatcacagtggttcatgatcaaaac
gtggtcttgttggagtggtttgccaatcctctgaatgacatgtacgctgatgcggtcacc
acagtggtgctggaggtgcagtcaaaccctaaagctcaaaaagttgttcagccccaagaa
aagaaggtggatgtgaatgttttccagagcagattactgaaaatgttccaagacatgttt
ggagaagaatgtgtcgactttaaagacaagaactgtctcactgtaagtgtagatgggaaa
actgccttcatcaacctggaaacccgaaccgcggagtatgaggaggccaattctgaagat
gattctctcagagaaatggtggagctcgctgtacagaggctgtatgaagccatgaacccc
gtcatgtga
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