Cyprinus carpio (common carp): 109112819
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Entry
109112819 CDS
T05134
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109112819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109112819
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109112819
U7-dependent histone pre-mRNA processing factors
109112819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
109112819
NCBI-ProteinID:
XP_042634325
Ensembl:
ENSCCRG00000010957
UniProt:
A0A9Q9ZAD3
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All DBs
Position
A20:complement(26202987..26219010)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYVHQVDAVLL
SHPDHLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFSLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYGVDFNHKR
EIHLNGCSLENISRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLSRVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDTPGEKRIELEIRKRCRLEGRELEEYVEKEKMKKEAAKKQEQAKEVDMDSS
DESDMEDDLEQPAVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERLKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLTNGEEPMEQDLSDVPTKCTSITQTLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAESCKAFSGKDIKVYVPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDMELAWIDGVLDMRVEKVDTGVIPEMGDAKEETED
GEPAVDVTPDLTTEPSAAANQQAMKTLFGEDEREISEESDVIPTLEPLPAQEVPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCHCDDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacggctctctccggagtccaggaggagtcggctctgtgt
tacctgttacaggtggacgagttccgcttcctgctggattgtggctgggatgaaagtttc
tccatggacatcatagattccctgaagaggtatgtgcatcaggtggatgcagtgctgctc
tctcaccccgatcatctgcatctgggcgctttaccgtacgctgtgggcaagctggggctc
aactgcaccatctacgccaccatccccgtctacaagatgggccagatgttcatgtacgat
ctctatcagtctcgacacaacacagaagatttcagtctgttcacactggatgacgtcgat
tcagcttttgacaaaatccagcaactgaaatactctcagatcgtcaacctgaaaggaaaa
ggtcacggtctgtccatcaccccacttcctgcgggtcacatgatcggtggcactatctgg
aaaatagtgaaggacggagaggaagagatcatctatggtgtggatttcaaccacaagagg
gagattcatctgaacggctgctccctggagaacatcagcagaccgtctctcctcatcacg
gactccttcaacgcctcgtatgttcagcctcgcaggaaacagcgtgacgagcaactgctc
accaatgtcatggagaccctccgcggcgacgggaacgtgctgatcgccgtggatacggcg
gggcgagtgctggaactggctcagctcctggatcagatctggaggaccaaagacgcagga
ctgggtgtttactcgctcgccctgctcaacaacgtcagctacaacgtggtggagttctca
aagtcccaggtcgagtggatgagcgataaactgatgcgatgcttcgaggacaagcgcaac
aaccctttccagttccgccacctgtcgctctgtcacagcctgtccgatctgtcccgcgtg
cccagcccgaaggtggttctgtgcagccagcccgatctggagtccggcttctcacgggag
ctcttcatacagtggtgtcaggacgccaagaactcagtcatcctcacctacaggaccaca
ccgggaacgctggcccgctacctcatagacaccccgggggagaagaggattgagctggag
ataagaaaacgttgtcgactggaaggacgagaactagaggaatacgtggagaaagagaaa
atgaagaaagaggctgccaaaaaacaggagcaagcaaaagaggtggacatggactcgagc
gatgagagcgatatggaggatgatctggagcagccggcggtggtgaagaccaaacatcac
gacctgatgatgaagggcgagggcgggaggaagggcagcttcttcaaacaggccaaaaag
tcctaccccatgttccctacacacgaggagcggctcaaatgggacgagtatggagaaatc
atcaggcccgaggagtttctggtgcctgagctccaggccacagaagaagagaagagcaag
ctggagtctggactgactaacggagaggagccgatggagcaggacctgtccgacgtgccc
accaagtgcaccagtatcacacaaactctagagatcagagctcgagtcacgtacatcgat
tatgaaggccgttctgacggcgactccattaagaagatcataaaccagatgaaacccaga
cagctaatcatcgttcacgggccgccggaggccagtcaggacctggccgagtcctgcaag
gccttcagcggcaaagacatcaaagtttacgtgccaaaactgcaggagacggtggacgcc
accagcgagacccacatttaccaggtcagactgaaggactctttggtcagttcgctgcag
ttctgtaaagccaaagacatggagctggcctggatcgatggtgttctggacatgcgggtg
gagaaggtggacacaggtgtcatcccggagatgggagacgccaaagaggagacggaggac
ggagagccagctgtggacgtgacgccggacctgacgactgagcccagcgccgcggctaac
cagcaggccatgaagactctgtttggagaggacgagcgggagatttcagaggagagcgac
gtcattcccacactggagccgctgcctgctcaggaggtcccgggtcatcagtctgtgttc
atcaacgagcctcgcctgtcggactttaagcaggttctgctgcgtgaagggatccaggcg
gagtttgtgggcggagttctggtgtgtaataatctagtggctgtcaggaggacggaagca
ggccgcatctgtctggaaggctgccattgtgatgactactacaggattcgtgagctgtta
tatcagcagtacgctgtagtctaa
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