Cyprinus carpio (common carp): 109113823
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Entry
109113823 CDS
T05134
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109113823 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109113823 (ddx6)
03036 Chromosome and associated proteins [BR:
ccar03036
]
109113823 (ddx6)
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109113823 (ddx6)
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109113823 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
109113823 (ddx6)
Chromosome and associated proteins [BR:
ccar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109113823 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
AAA
AAA_22
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109113823
NCBI-ProteinID:
XP_042599522
Ensembl:
ENSCCRG00000048838
UniProt:
A0A9Q9XCY7
LinkDB
All DBs
Position
B18:4864535..4878654
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AA seq
428 aa
AA seq
DB search
MSTARMENPVILGLSTQNGQMRGSVKPAGGPGGGGGGPQTTQPAPVKPSSTVNNGNSQPA
PTANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMIVLDEADKLLSQDFVQMMEELLSYLAKQRQILLYSATFPLSVQKFMNSHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGE
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattctgggactgtcgactcaaaatggccaa
atgcgaggctctgtgaagccagcaggtggtcctggaggaggtggagggggaccccaaaca
acgcagccagccccggtcaaaccctccagcacagtcaacaacggcaactcccagcctgca
cctacagccaacactatcatcaagcctggggatgactggaagaagaatctaaagcttcct
ccaaaggatttgcgcatgagaacttcagatgtgacggcgaccaagggaaacgagtttgag
gattactgcctgaaacgggaactgcttatgggcatctttgaaatgggctgggagaaaccg
tcacctattcaggaggagagcattcccattgcgttgtctgggagggacattctggccaga
gccaagaatggcacaggaaaaagtggcgcctacctcattcccttacttgaacggattgac
ctgaagaaagacagcatacaagcgttggttattgtgcccactagagaactggctctacaa
gtgagccagatatgcattcaggtcagcaaacacatgggcggggtcaaggtcatggcaact
actggtggaaccaacctccgtgatgacatcttgagacttgacgaaacagtgcatgttgta
attgccactccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaa
gtacagatgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatg
atggaggagctattgagctatttggccaaacaaaggcaaattttgctgtactctgccacc
ttcccactgagtgtgcagaagttcatgaactcccatctgcagaagccctatgagataaac
ctgatggaggagctgaccctgaagggggttacccagtattacgcctatgtaactgaaagg
cagaaagtccattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcacagcgagtggagctcctggcaaagaagatctctcagcttggatac
tcctgtttctacattcacgccaagatgagacaggaacaccggaaccgtgtgttccatgat
ttcagaaatggcttatgtcgaaatctcgtctgcactgatctcttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaactttgatttccccaaacttggggagacgtacctc
catcgcattggcagatctggtgagtag
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