Cyprinus carpio (common carp): 122134070
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Entry
122134070 CDS
T05134
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ccar
Cyprinus carpio (common carp)
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
122134070 (rbm39a)
Spliceosome [BR:
ccar03041
]
Common components
Common spliceosomal components
General mRNP proteins
122134070 (rbm39a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
PRP38_assoc
RRM_5
DUF8400
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
122134070
NCBI-ProteinID:
XP_042590100
LinkDB
All DBs
Position
B11
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AA seq
525 aa
AA seq
DB search
MADDLDIEAMLEAPYKKDDNKSLSTNGHEERSKKKKKSKSRSRSRSRERKRSRSHDRKKS
HDRRRSRSKDRKRSRSRERRRSRSKSRERGGRYRAPFSGLKFNGGPRGKTGPPPAIKLSR
RRSRSCSPFKKDKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDV
RIISDRNSRRSKGIAYIEFVDTTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNL
QKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFADAE
CAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMAR
LAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHC
FQLSNMFNPNSENDPGWEVEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPSIPAAM
AAVSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLMPSRR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacattgaagcaatgctggaagctccatataaaaaggatgacaac
aagtccttaagtaccaatggccacgaggagcggagtaagaagaaaaagaagagcaaaagt
cgcagcagaagccgcagtcgggaaaggaagagaagcaggagtcatgatcgcaagaagagt
cacgaccgcaggaggagccgcagcaaagatcggaagcgcagccgcagcagggagagacgc
cgcagccgttccaagagcagggagcgtggtggtcgctacagagctccattttctggcctg
aaatttaacggtggtcccagggggaagactggcccaccacctgccatcaaactaagccgt
agaaggtctagaagctgcagtcctttcaagaaagacaaaagccctataagacagcccatt
gataatctcacccccgaagaaagagatgcacgcacagtgttctgcatgcagctggcagca
agaatccgaccacgagacctggaagaattcttctctgcagtgggaaaagtgcgagatgtg
agaatcatctctgatagaaactccagaagatccaaaggaattgcatacattgagtttgtg
gataccacctctgtacctttagcaattggcctttctggtcaaagacttctcggagtacca
atcattgttcaggcttcacaggctgagaagaacagagcagctgcgttggccaacaactta
cagaagggcagttctggacctatgagactatatgttggctcattgcattttaacatcaca
gaagacatgctcagaggcatctttgagccgtttggaaggattgatagtattcaactgatg
atggacagtgaaacaggacgatcaaaaggatatggctttatcacatttgctgatgctgaa
tgtgctaagaaggctctggaacagcttaatggctttgagttggctggcagaccaatgaaa
gtgggacatgtgacagagcgcactgatgcctcaaccgccagctccttcctggacaatgat
gagctggaaaggaccggcattgatctgggaacgactggtagacttcagctgatggccaga
ctggccgagggtactggtctccagatcccacctgctgctcaacaggcccttcagatgagt
ggctccatggtagccatggctgcagctacggctgctatgaaccctggattgagttttaac
atcaatgtgcccacaaaccaagctttgaatttaccatcacaaccaattgcaacacactgt
ttccaactgtctaacatgttcaatccaaactcagaaaatgatcctggttgggaagttgag
attcaggatgatgtcattgaagagtgcaacaaacacggtggagtcatacacatatacgtg
gacaagaaatctgctgaaggtaatgtctacgtgaagtgtcccagcattcctgctgctatg
gctgcagtcagtgcattacatggacgttggtttggaggtaaaatgatcacagcagcttat
gttcctcttcctacataccacaaccttttcccagagtcagtgcaggcaacacagcttctt
atgcccagtcgccggtga
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