Cyprinus carpio (common carp): 122134709
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Entry
122134709 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122134709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccar03041
]
122134709
Enzymes [BR:
ccar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122134709
Spliceosome [BR:
ccar03041
]
Complex A
U2 snRNP components
U2 related factors
122134709
Complex B
122134709
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
122134709
NCBI-ProteinID:
XP_042567272
UniProt:
A0A9Q9VLK2
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All DBs
Position
A21:21902207..21922327
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AA seq
1041 aa
AA seq
DB search
MFERHCDETMGRESRHYRKRSGSKGPGTKGPGSRSKSRSPDSKRSKKEVRNRREKSRSRE
RHRSRSRDRKRPRRSRSRDRRRSRSQEHRSRGRSKEKSENTEPSAEKKKMKEEKEEEKPE
DQDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGELKKELEEMKQGKKWSLEDDEDDD
EETQAPVEPDEEEEEAEKDGSAGTEEETPMEQEVREELDPLDAYMEEVKEEVKKFNMGTM
KGGSDKKGSVYMTKVVTVMKTKKMVHTSKKKGELMENDQDAMEYSSEEEEVDLQTALTGL
QTKQRKVLEPVDHQKIEYEPFRKNFYVEVPELFRMSPEEVNEYRLELEGITVKGKGCPKP
IKMWVQCGISMKVLSAMKKXVERHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAF
LLPMFRHILDQRPLEDAEGPIAVIMTPTRELALQITKECKKFSRSLGLRVVCVYGGTGIS
EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRI
VDNFRPDRQTVMFSATFPRSMEALARRILSKPIEVQVGGRSVVCSDVQQHVIVIAEEKKF
LKLLEILGHYQEKGSIIIFMDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFK
NGACRLLVATSVAARGLDVKQLILVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEE
QARYSGDIIKALELSGSPVPSELELLWTNFKEHQKAEGKSIKSSSGFSGKGFKFDETEHA
LANERKKLQKAALGLHDSDDEDAALDIDEQIESMFNSKKRVKDFSAPGGAAGASAAGVSG
SVSGVSGPSTPSAGNIQKLEIAKKLALKIQAQKNLGAEAQDVMQQATNAILRGGTMIAPS
VSAKTIAEQQAEKINAKLNYTPVEKQEEERHAAEATDTVKRYEEELEINDFPQTARWKVT
SKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKSKAEITRLIR
EELIRLQNSYQPSSKNRYKVL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacgacactgcgacgaaaccatggggcgagagtcacggcattacaggaagcgc
tccggctcgaagggccccggcacaaagggccccggcagcaggtccaagagccggtcacca
gactccaagcgctctaagaaggaggtgcgcaaccgcagagagaagtcacgcagccgagag
cgccacagatcacgctccagagaccgcaagagaccgaggcgctccaggagtcgagacagg
agacgctcccgcagccaagagcacaggagccgagggaggagcaaggagaagtctgagaac
acagagccgtccgctgagaagaagaagatgaaggaggagaaggaggaggagaagcctgaa
gatcaggactttgaccagaacactctggaggaggagatgaggaagaggaaggagcgcgta
gagaagtggagggaggagcagaggaagaaagccatggagaacatcggagaactcaagaag
gagctggaggagatgaagcaggggaagaagtggagtctggaggacgatgaggatgacgat
gaggagactcaagcgcccgtggagccggacgaagaggaagaggaggcagagaaagacgga
tcggctgggacagaggaggagacaccgatggagcaggaggtcagagaggagctggacccg
ctggacgcttacatggaggaggtcaaagaggaggtcaagaagttcaacatgggcaccatg
aaaggaggcagcgacaagaaaggcagtgtgtatatgaccaaagtggtgaccgttatgaag
acaaagaagatggtgcacaccagcaagaagaaaggagagctgatggagaacgaccaggac
gccatggagtactcatcagaggaagaggaagtggacttgcagacggccctcacaggctta
cagaccaaacagaggaaagttctggagccggttgatcatcagaagatcgagtacgaaccc
ttccgcaagaacttctacgtggaagtgccggagctgttcaggatgagccctgaagaggtg
aacgagtaccgtctggagctggagggcatcaccgtcaaaggcaaaggctgtccgaagccc
atcaagatgtgggtgcagtgcgggatatccatgaaagtgctgagcgcgatgaagaagtga
gtagagcgtcacaactatgagaagccgaccccgatccaggcccaggccatcccggccatc
atgtctggacgcgacctcatcggcatcgccaaaacaggaagcggcaagaccatcgccttc
ctgctgcccatgtttcggcacatcttagaccagcgtccgctagaagatgctgaaggaccc
atcgccgtgatcatgacgcccacgcgtgagctggctctacagatcaccaaagagtgcaag
aagttctccaggtctctgggtctgcgtgtggtgtgtgtgtacggcggcaccggcatcagc
gagcagatcgcagagctgaagcgcggcgcagagatcatcgtgtgcacaccgggacgcatg
atagacatgctcggagccaacaacggtcgcgtgactaacctgcgcagggtcacgtatgtg
gtgatggacgaggctgaccggatgttcgacatgggctttgaaccgcaggtgatgcgtatc
gtggataacttcaggcccgatcgtcagaccgtcatgttttcggccacgttcccgcgctcg
atggaggctctggcgcgcaggatcctgtccaaacccatcgaggtgcaggtgggcggccgg
agcgtggtgtgttcagacgtccagcagcacgtgattgtgatcgcggaggagaagaagttc
ctgaagctgctggagatcctgggtcactatcaggagaagggctccatcatcatcttcatg
gacaaacaggagcacgccgacggactcctcaaagacctgatgaaggcctcgtacccctgc
atgtctcttcacgggggcatcgatcagtacgacagagacagcatcatcaatgacttcaag
aacggcgcgtgtcggctgctggtggccacgtctgtggcggcgcgaggcctggacgtcaag
cagctgatcctggtgatcaactacagctgtcccaaccactatgaggactacgtgcaccgc
gccggacgcacgggacgagccgggaacaagggttacgcgtacaccttcatcactgaagaa
caggcccgctactctggagacatcatcaaagcgctggagctgtccggatcccccgtcccg
tcggagctcgagctgctctggaccaacttcaaagagcaccagaaagccgaggggaagagc
atcaagagcagcagtggattctctgggaagggctttaagttcgatgagacggagcatgcg
ctggctaacgagaggaagaagctgcagaaggctgcgttaggcctgcatgactctgacgac
gaggatgcggctctggacatcgacgagcagatcgagagcatgttcaactccaagaagcgt
gtgaaggacttctctgctccgggcggcgctgcgggagcgtctgcagccggcgtgagcgga
tccgtgtccggtgtgtccggccctagcactccgtccgccgggaacatccagaaactggag
atcgccaagaaactggccctcaagatccaggcgcagaagaacctcggcgcggaggctcag
gatgtgatgcagcaggccacaaacgccatcctgcgcggcgggacgatgatcgcgccctcc
gtctcggccaagaccatcgcggagcagcaggcggagaagatcaacgccaaactgaactac
acaccggtggagaagcaggaggaggagcggcatgccgccgaggccacggacaccgtcaag
agatacgaggaggagctggagatcaacgacttccctcagacggcgaggtggaaggtgacg
tctaaggaggctcttcagcgcatcggagagtattcggaggcggccatcactatacgagga
acatacttccctccgggcaaagagcccaaagagggggagcgcaagatctacctggccatc
gagagtgcgaacgagctggccgtgcagaagtccaaagcagaaatcacacggctgatccga
gaggagctgatccgtctgcaaaactcctaccagcccagcagcaagaacagatacaaggtt
ctgtag
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