Kaistella carnis: EIB73_00135
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Entry
EIB73_00135 CDS
T06869
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccas
Kaistella carnis
Pathway
ccas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIB73_00135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccas03019
]
EIB73_00135
Enzymes [BR:
ccas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EIB73_00135
Messenger RNA biogenesis [BR:
ccas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EIB73_00135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YibE_F
Motif
Other DBs
NCBI-ProteinID:
AZI31675
UniProt:
A0A3G8XDR7
LinkDB
All DBs
Position
33510..34862
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AA seq
450 aa
AA seq
DB search
MEKMTFADFDLPEKILDVLADSNLFEPTPIQLKTLSPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYNKSGNPTVLILVPTRELVVQVAGIVENLTKNLTARVIGIYGGKNINTQKLLF
NDGCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFKAQLTHIFQMMKEKRQ
NILFSATMTEAVDALLYEYFSGPVEISLAKSGTPLEKIEQVGYKVENFNTKINLLQHLLE
TDADFSKVLIFCNNKKHADLLYTKIEELFPDQFDVIHSNKSQNYRLNAMRNFENQKVRGL
ITTDIMARGLDISDITHVINFEIPEVPEQYIHRIGRTGRADKNGVAVSFVSKKEEEQLLD
IELLMDKSVTMLEFPTGVKINPVKIASEKDEIVMKNAHTVKLEEGGGAFHEKKDKNKKEN
WGGPHARKIPKKVGANRAHEKAKSKAKRKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatgacctttgccgatttcgatcttccggaaaaaattcttgatgttttagcg
gattctaatttatttgaaccgacaccgattcaacttaaaactttgagcccgattctgtcc
ggacgtgatgtgatgggaattgctcaaacaggtaccggaaaaactttggcgtatctcctt
cctgttcttaaaacctggaagtataacaaaagcggaaatcctaccgttcttattcttgta
ccaacccgtgaattggtggtgcaggtggcaggtattgttgagaatctcaccaagaattta
accgcgagagtcattggtatttatggcggtaaaaatattaacacgcagaaattacttttt
aacgacggttgcgatatccttgttggaactcctggtcgggtaatggatctggcgattgac
aatgcaatttcattaaaagaagttcagaaacttatcatcgatgagtttgatgaaatgttg
aatttgggttttaaagcccagctgacacatatttttcaaatgatgaaagagaaaaggcaa
aatatccttttttctgcaaccatgacagaagcggttgatgctttgctttatgaatatttt
tcaggtcctgtagaaatttcattggcaaaatcaggaacaccacttgagaaaatagaacaa
gtcggatataaagtggagaactttaataccaaaattaatttacttcagcatcttttagaa
accgatgcagacttttcaaaagtactgatcttctgtaataataaaaaacacgccgattta
ctttatacaaaaattgaggagcttttccccgatcaatttgacgttattcactccaataaa
tctcagaattaccgtctgaacgccatgcgaaattttgaaaatcaaaaagttcgcggtttg
attacgaccgatattatggcgagaggtctggatatttcagatattacccatgttattaat
tttgaaattcctgaagttccggaacaatacattcaccggattggtagaacgggtagagca
gataaaaatggtgttgcggtttcttttgtcagcaaaaaagaagaagagcagttattggat
attgagttgttgatggacaagtctgtaacaatgttagagttcccgacaggagtgaagatc
aatcctgtcaaaattgcttctgagaaagatgagattgtgatgaaaaatgcacataccgta
aaacttgaagaaggtggcggtgcatttcatgagaaaaaagacaaaaacaaaaaagaaaat
tggggtggtccacacgccagaaaaattccgaagaaagtcggcgcaaatcgggcccacgaa
aaagccaaatcaaaagccaagagaaaaaaataa
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