Kaistella carnis: EIB73_00720
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Entry
EIB73_00720 CDS
T06869
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccas
Kaistella carnis
Pathway
ccas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIB73_00720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccas03019
]
EIB73_00720
03009 Ribosome biogenesis [BR:
ccas03009
]
EIB73_00720
Enzymes [BR:
ccas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EIB73_00720
Messenger RNA biogenesis [BR:
ccas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EIB73_00720
Ribosome biogenesis [BR:
ccas03009
]
Prokaryotic type
rRNA helicases
EIB73_00720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZI31785
UniProt:
A0A3G8XE37
LinkDB
All DBs
Position
176307..178082
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AA seq
591 aa
AA seq
DB search
MNLFTETNLSPEVLKAIGEMGFVSPTEIQKQTIPFISTDTRDLIALAQTGTGKTAAFTLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDITNYSKYLKNIKTTAVYGGSSITDQIRSLR
EKPQIIVGTPGRVIDLINRKALDFSEIQWLILDEADEMLSMGFKEDLATILRETPDTKQT
LLFSATMNREVERISKNYLTNPHRISVGSINEVKKNIKHEYYVVGYRNKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISISLIKPEESRKLKQIKSV
TKIDIVEKKIPTGKTIIEAQVAGVFEKLFTEHENLVEFDNDLIPDLSAFTKEELVHQMLQ
LQLREMALYYKDKDDLVDQKFNSDDRGGDRGRDRGRDRDGRGRDRDRGDRREGGNRDNGN
RFRESGSRDFGRDRDGGNRGESRDRKPRKNSEDMVRFFFNLGKRDNLKKIDMLEIINKST
EKSRKRPDIGNIEILEKFSFFEVEKGFKDEVLKGLQTQKFKGKDMRAEESN
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatctaagtcctgaagttttgaaggcaattggcgaaatg
ggctttgtgagcccaacagaaatccaaaaacagactattccttttatctctacagatact
cgcgatctaatcgcacttgcgcagacgggaacaggcaaaacagcagcgtttacgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaattattggtgctttgtccaacc
agagaactttgtttgcaaattaccaaagacattactaattattcgaaatacttaaaaaac
atcaaaactacagcggtttatggtggtagcagtattactgatcaaatcagatctttacgt
gagaaaccacaaattattgtaggaactccagggagagttattgacttgatcaacagaaaa
gcccttgatttctcagaaatccaatggttaattcttgatgaagctgatgaaatgttatca
atgggtttcaaagaagatttggcaacaattctacgggaaactcctgatacaaaacaaact
cttttattctcggcaacgatgaacagagaggttgaacgtatttctaaaaactatttaacg
aatccacacagaatttctgttggatcgattaatgaagttaagaaaaatatcaaacacgaa
tattacgtggttggttacagaaacaaaaaagaagctttgaagagattgatcgatgcaaat
ccaaatcaatattcaattcttttctgtcgaacgcgtatggaaactcaggaagtcgcagac
tttttgatgcaaaacgggtatgctgcagatgcacttcacggtgatttatcgcaggcacaa
cgtgatacggtaatgaaaaaattccgtttgaaaaacattgatatcttagttgcgactgat
gttgcggcaagaggtttagatgttgattcattaacccacgttattcacttctctttaccg
gatgatcctgaagtttttgttcaccgtagtggtagaacaggacgtgcaggaaaagatgga
atttcgatttctttaattaaacctgaagaatcaagaaaactgaaacaaattaaatcagtt
actaaaattgatattgttgagaagaaaatcccgaccggtaaaacaattatcgaagctcag
gttgctggcgttttcgagaagttatttacggagcacgaaaatcttgttgaatttgacaat
gatttgattccggatttatctgcctttactaaagaagagttggttcatcaaatgttgcag
ttacaactgagagaaatggcgctttattataaagataaagacgatttagttgatcagaaa
ttcaacagcgacgatagaggaggagaccgaggtagagatcgtggcagagaccgtgatgga
agaggtagagaccgcgatagaggcgaccgaagagaaggtggaaacagagacaatggcaac
cgcttcagagaaagtggaagtcgtgattttggtagagatcgtgacggtggaaacagaggt
gaatccagagacagaaaaccaagaaaaaacagtgaagacatggttcgctttttctttaac
ttaggaaaaagagacaatttgaaaaaaattgacatgttagaaatcatcaataaatcaacg
gagaagtcaagaaaacgtccggatatcggaaatatcgagattttggaaaaattctctttc
tttgaagtagaaaaaggttttaaagatgaagttctgaaaggattacaaactcagaaattc
aaaggaaaagatatgagagcagaagaatctaactaa
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