Kaistella carnis: EIB73_08340
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Entry
EIB73_08340 CDS
T06869
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ccas
Kaistella carnis
Brite
KEGG Orthology (KO) [BR:
ccas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccas03009
]
EIB73_08340 (rlmD)
Enzymes [BR:
ccas01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EIB73_08340 (rlmD)
Ribosome biogenesis [BR:
ccas03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EIB73_08340 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_15
Methyltransf_11
TRM5-TYW2_MTfase
PCMT
N6_N4_Mtase
RrnaAD
Methyltransf_4
Methyltransf_2
NpmA
PrmA
Motif
Other DBs
NCBI-ProteinID:
AZI33181
UniProt:
A0A3G8XWU3
LinkDB
All DBs
Position
complement(1807414..1808823)
Genome browser
AA seq
469 aa
AA seq
DB search
MRKRNKNIVLENIKLVSAGSKGVAVGKTAEGKTVLVSGAVPGDVVNARVKKSKSNYFECD
VAEIVEKSPYRVEPRCIHFGVCGGCKWQNLSYEKQLEFKQDEVFNHIKRIAGIEDFETLP
ILGSEDQYFYRNKMEFSFSNARWLTQYEISAEENYGNRDALGFHIPGMWSKILDLKECFL
QEDPSNAIRLAIRNYAVDNGLEFFDVRNQAGFLRTVMFRQNSKGEWMVLFQLFRKEKENM
QKMFDFLLSKFPEIKTLMFAINSKQNDSIYDQNVETYFGDGFLMEEMEGLKFKIGPKSFF
QTNYKQALNLYAKTLEFADLKGDEVVYDLYTGTGTIAQYVARKAKQVIGIESVQESINAA
KEHAELNGLDNCTFYCGDMKEIFNDEFIAQHPKADVLITDPPRDGMHQKVVEQILKIAPE
KIVYVSCNSATQARDLALMKEQYKLVKILPVDMFPQTHHVENIALLVKI
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagagaaataagaatattgttctagaaaatattaagctggtttcagctgggtct
aaaggagttgcagttggtaaaacagcggaaggaaaaacagttttggtttccggcgctgtt
cccggcgatgttgtgaatgcgcgcgtaaagaaatcgaaatccaattacttcgaatgtgat
gtcgccgagattgtagaaaaatctccttatcgtgtagagccgagatgtattcatttcggc
gtgtgtggcggttgcaaatggcagaacctttcctatgaaaagcaacttgaatttaaacag
gacgaagtttttaatcatattaaaagaattgcagggatcgaagatttcgaaaccttaccg
attcttggaagcgaagatcaatatttctatcgtaataaaatggaattttctttctccaat
gcccgttggttaacccaatatgaaatcagtgccgaagaaaattacggtaacagagatgct
ttaggttttcatattcccggaatgtggagcaagattttggatttgaaagaatgttttctt
caggaagatccctcgaatgcaatccgtttggccattagaaattatgcggttgataacggc
ttagaattttttgatgttcgaaatcaggcaggttttttaagaacagttatgtttcgtcaa
aactcaaaaggagaatggatggttcttttccagctcttccgaaaagagaaagaaaatatg
cagaaaatgttcgatttcctattgagtaaattcccggaaattaaaacgttgatgtttgct
attaattcaaaacaaaatgactccatttatgatcaaaatgtagagacttatttcggcgat
ggctttttaatggaagaaatggaaggtttgaaatttaaaatcgggccgaaatcttttttc
caaaccaattataaacaagctttaaatttatacgctaagaccttagaatttgccgatcta
aaaggggatgaggttgtatatgatctttatacgggtaccggaacaattgcacaatatgtt
gcgcggaaagcaaaacaggtcatcggaattgagtctgttcaggaatcgatcaatgcggca
aaagagcatgcagaattaaatggtcttgacaactgtactttttattgtggtgatatgaaa
gaaatctttaatgatgaatttatcgcccagcatccaaaagctgatgtcttgattaccgat
ccgccgagagacggaatgcatcaaaaagtggtagagcagattttgaagattgctccggaa
aaaatcgtgtatgtgagttgtaattcggcaacacaggcgcgagatctggctttgatgaaa
gagcagtataaattggttaaaatcttgccggttgacatgtttccgcagacgcatcatgtt
gaaaatattgcacttttggtaaagatttaa
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