Kaistella carnis: EIB73_13145
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Entry
EIB73_13145 CDS
T06869
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccas
Kaistella carnis
Pathway
ccas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EIB73_13145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccas03021
]
EIB73_13145 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccas03400
]
EIB73_13145 (rpoC)
Enzymes [BR:
ccas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EIB73_13145 (rpoC)
Transcription machinery [BR:
ccas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EIB73_13145 (rpoC)
DNA repair and recombination proteins [BR:
ccas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EIB73_13145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl
RPOC_hybrid
RnfC_N
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AZI34062
UniProt:
A0A3G8XLH6
LinkDB
All DBs
Position
2843583..2847848
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSNFTKITIGLSSPEIILQNSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQQGIAKRADGADFDNMEFLTEEEYLDVLETLPADNQYLDD
ADPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNESSKQRRTEALKRLNVVEALRGA
NTRMVNRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILEGVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLCTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKQLDSTDTMKVK
GEGLAFYSPEEVEIAYAEGQVSLNAKIRCRVPVKEEGELVTRLIETTVGRVLFNQIVPKE
VGFVNELLTKKSLRNVIGRILADTDFPTTVRFLDDMKDLGYSNAFRGGLSFSLGDIVIPE
EKKTMIATAVETVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITENDCGTLRGTEITPLKKNDEIVE
RLSERILGRVSLHNVYDPETDEVILEADQLIDEAIAKRIEAAGIDAVEVRSPLTCEAKKG
ICAACYGRNLATGKPIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNIIENPSIVAR
RDGIVEMDEIRTVTSENEAGKKAEIVVSRSTEFRLVADNAARTPLMVANIPYGSELAVKP
GDKVKKGDLICKWDPYNAVIIAESAGKIEYEDIVQGVSFSLEIDEQTGFEEKVISESRNK
KAVPTLKVVDTKGVEQKAYNLPVGAHIMVNDGEKIKAGKVMIKIPRKSAKSGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGEISKYLVKLSNQILVQEN
DFVRAGSPLSDGSTTPDDILKIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLQENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDLALVQVREALSATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
VDYLSGLKENVIVGHRIPAGTGLKDYQNIIVGSKKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaaataaaacaagtaattttacaaaaattacgattggtctttcttctccc
gaaatcattttacagaattcaagaggtgaagttttaaagcccgaaacaattaactaccgt
acgcacaagccggaaagagatggtcttttctgcgagaaaattttcggtccggtaaaggat
tacgaatgtgcatgtgggaaatataaaagaatccgatacaaaggaatcgtttgtgaccgt
tgtggtgtagaagttaccgagaaaaaagtacgtagagaaagaatcgggcacattggcttg
gtcgttcctgtggctcatatctggtatttccgttctttgccgaacaaaattggttacctt
ttaggattgccgtctaagaaattagacatgatcatttattatgaaagatatgtcgtaatt
cagcaaggtatcgctaaaagagccgatggtgcagatttcgacaatatggaatttttaaca
gaggaagaatatctggatgttctggaaacacttcctgctgataaccaatatcttgatgat
gctgatcccaacaaattcatcgccaaaatgggtgctgaagcagttgaagaattattaaag
agaatcgatcttgatgcattgtctttcgacctgcgtcataaagcacacaacgaatcttca
aaacaaagaagaacagaagccctaaaaagattaaacgtagtagaagcattgagaggtgca
aatacgcgtatggtcaaccgtccggaatggatgattatgagagtgcttcctgtaattcca
ccagaattgagacctttggttccattggatggtggtcgttttgcgacttcagatttaaat
gacctttaccgtcgtgtaatcattagaaataaccgtttgaagagactgttggagatcaaa
gctccggaagtaatccttcgtaacgaaaaaagaatgttgcaggaatcggtagattcatta
ttcgataacaccagaaaatcttctgcagtaaaatcggaatcaaacagaccattgaaatca
ctttcagattcattgaaaggaaagcaaggtcgtttccgtcaaaacttactcgggaaacgt
gtagattattctgcccgttccgtaatcgtcgtaggtccaaacttacagttgcacgagtgt
ggtattccgaaagatatggcagcggaactatacaaaccgtttatcatcagaaaactgatt
gaaagaggaattgtaaaaaccgtaaagtctgctaaaagaatcattgatagaaaagaaccg
gttgtatatgatattctggaaggagtaatgaagggtcaccctgttcttctgaacagagcg
cctacgcttcacagactgggtattcaggctttccaaccgaaaatgatcgaaggaaaagca
attcagcttcacccattgtgtaccactgcatttaatgcggatttcgatggtgaccagatg
gcggtgcatttacctttaggtccggaagcaattctggaagcacagcttcttatgttagga
tcgcagaatattttgaaccctgcaaacggttctccaattacagtaccttctcaggatatg
gttttgggtctatattttatgaccaaacaactggattctacagatacaatgaaagtaaaa
ggagaaggattagcattctattctccggaagaagtagagatcgcttatgcagaaggacaa
gtttctttgaatgcgaaaataagatgtagagttcctgttaaggaagaaggtgaattggta
acaagacttatcgaaactacggtaggtagagtattgttcaaccagatcgttcctaaagaa
gttggttttgtaaatgaacttttgaccaaaaaatcattgagaaatgtaattggtagaatt
cttgccgataccgatttcccaacgactgttcgtttcttggatgacatgaaagacttaggt
tattcaaatgcattccgaggaggattgtcctttagtttaggtgatatcgtaattcctgaa
gaaaagaaaaccatgatcgcaactgccgtagaaacagtagatgagatcaaggcgaactat
aacatgggtcttatcaccgatacagagcgttataaccaggttattgatgtttggacgaat
accaacgcaggattaaccgagatgattatgagcagaatgaaaaccgatcaaggtggattc
aactctgtttatatgatgcttgattctggagcaaggggttccaaagagcagattcgtcag
ctttcaggaatgagaggtttgatggcgaaaccgcaaaaagccggttcaactggggctgag
attattgaaaacccgattgtagcgaactttaaagaaggtctttcaattttggaatacttt
atctctactcacggtgctcgtaaaggtcttgcggatactgcactaaaaactgccgatgcg
ggttatttaactcgtagattggttgacgttgcgcaggatgtgatcattactgaaaacgac
tgtggaactttaagaggaacagaaattaccccacttaagaaaaatgacgaaatcgttgaa
agactttccgaaagaatcttaggtagagtttctttacataatgtatacgacccggaaacc
gacgaggttattttggaagctgatcaattaattgatgaagccattgcaaaaagaatcgaa
gctgcaggtattgatgccgtagaagtacgttcaccattaacttgtgaagcgaaaaaagga
atctgtgccgcttgttacggtcgtaacttagcgactggtaaaccaattcacatgggtgaa
gcagtaggagttatcgcagcacaatccattggggaaccaggaactcagttaacattgaga
accttccaccaagggggaactgcaggaaatattatcgagaatccttccatcgttgccaga
agagatggtatcgtagaaatggatgaaattagaacagtaacttcagaaaacgaagctggt
aaaaaagccgagatcgtagtttcccgttcaacggaattccgtttggtagcagacaatgct
gcaagaacaccattaatggttgctaacattccttatggatcagaattggcggttaaacca
ggtgataaagtgaaaaaaggagatctaatctgtaagtgggatccgtataatgcggtaatc
atcgcagaatctgcaggtaagatcgagtatgaagatatcgttcagggggtttcattctca
ttagagattgatgagcagactggcttcgaagagaaagtaatttctgaatcaagaaacaag
aaagccgtaccaaccttgaaagttgtggataccaaaggagtagagcaaaaagcctacaac
cttccggtaggtgcccacatcatggtaaacgatggtgagaaaattaaggccggtaaggta
atgattaagatcccaagaaaatctgcaaaatctggagatattacagggggtctaccaaga
gttaccgaattgttcgaagcgagaaatccttcaaaccctgccgtagttacagaaatcgat
ggtgttgtatcttatggaaaaatcaaaagaggtaaccgcgagctgatcgtggaagctaaa
actggagaaatctctaaatacttagtaaaactttcgaaccagatcttggttcaggagaat
gacttcgtaagagcaggttccccactttctgatggttctaccacaccggatgacatcttg
aaaattaaaggaccaactgccgtacaggaatatttggttaatgaaattcaagaggtttac
cgtttgcaaggggtaaaaattgatgataaacactttgaaattattgtgcgtcaaatgatg
accaaagtttcaattgttgatggtggagatacccagttcttagaaggtgcgttggaacac
aaatatgatttcttacaggaaaacaacagagtgttcggcttaaaagtagtcgtagatgca
ggagattctaaagaattcaaaccaggtcaaatgattactgcccgagaattaagagatgag
aactctaagctgaaacgtgaagacttagccttggttcaggtgcgtgaagctttatctgca
actgccacaccggtattgcaggggattacaagagcggcacttcaaacaaaatcgttcatg
tcggcagcatccttccaggaaacgaccaaagtattgaacgaagcagcggtttccggaaaa
gtagattacttgagcggtctgaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtctgaaagattatcaaaatataatcgtaggttcgaaaaaagaattcgaagacatc
aactaa
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