Ceratitis capitata (Mediterranean fruit fly): 101454563
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Entry
101454563 CDS
T07533
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccat
Ceratitis capitata (Mediterranean fruit fly)
Brite
KEGG Orthology (KO) [BR:
ccat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccat03016
]
101454563
Enzymes [BR:
ccat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101454563
Transfer RNA biogenesis [BR:
ccat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101454563
Prokaryotic type
tRNA splicing ligases
101454563
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
101454563
NCBI-ProteinID:
XP_012155865
UniProt:
W8CA79
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRPYNEELKYLEKISDCCWRIKKEFQPNMKVEGCFYVNSRLERLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD
KWSASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIETNDRQLACARIN
SQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFTTTPDDLDMHVIYDVSHNIAKVE
NHIVNGREKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTEKGM
NETFGSTCHGAGRALSRAKSRRNLDYKDVLEKLEEMGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHIAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtacggccgtacaatgaggaattaaaatatcttgaaaaaatcagcgattgttgc
tggcgaataaaaaaagaatttcaacccaatatgaaagtagagggttgtttttatgtaaat
agccgattagagaggctgatgctggaagagttaaaaaattcttgtaggccgggagctgtt
ggaggtttcttgcctggagtgaagcaaatagcaaatgtagcggccttaccgggcattgta
ggtcgttctatcggtcttccagatatacattctggatatgggttcgctattggaaatatg
gcagcattcgacatgaacgatcccacttcaattgtaagccccggaggtgtcggatttgat
attaactgtggagttcgcttactgcgaacaaacctcttcgaaaaagatgttcaaccagta
aaagagcaattggcccaatctctttttgatcacatacctgttggtgttgggtcaaaaggc
ataattcctatgaatgctcatgatttggaagaagctttagaaatgggaatggactggtct
cttcgcgaaggatatgtttgggcagaagacaaagaacattgtgaagagtatggtcgaatg
ttgaatgcagatccttccaaagttagcttacgtgcaaaaaaacgaggcctgccccaatta
ggaacattaggtgcgggcaatcattatgctgagatacaaattgttgatgaaatatatgat
aaatggagtgctagtaaaatgggcatagaagaaaaaggtcaagtatgtgttatgatacat
tcgggaagtcgtggttttgggcatcaggtggctactgatgctttggtgcagatggaaaaa
gccatgaaacgagatcaaatcgaaaccaacgacagacaattagcttgtgcccgcataaat
tctcaagagggtcaagactatttaaaagcaatggcagcagctgcaaattttgcatgggtg
aatcgcagctcaatgacgttccttacccgccaggctttcgctaaaatgttcactaccaca
cctgatgatcttgatatgcatgtaatttatgacgtttctcataacatcgccaaagtggag
aatcatattgtgaatggcagagaaaaacagttacttgtacataggaaggggtccacgcga
gcgtttccaccacatcatcccttaataccggttgactaccaacttactggacaaccggta
ttagtcggaggtacaatgggtacatgcagctacgttcttaccggaactgagaagggaatg
aatgaaacatttggatccacatgtcatggagcaggtcgagctttatcacgagctaaatct
cgacgtaatttggattataaggatgtactcgagaagctggaagaaatgggaattgctata
cgggtcgcatctcccaagctcgttatggaggaagcacctgaatcgtataaggatgtaact
gatgtcgttgatacatgtcatatagctggaattagcaaaaaatgcataaagttacgtcca
attgctgtaataaaaggttaa
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