Ceratitis capitata (Mediterranean fruit fly): 101455775
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Entry
101455775 CDS
T07533
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccat
Ceratitis capitata (Mediterranean fruit fly)
Pathway
ccat03013
Nucleocytoplasmic transport
ccat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101455775
03015 mRNA surveillance pathway
101455775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccat03019
]
101455775
Enzymes [BR:
ccat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101455775
5.6.2.5 RNA 5'-3' helicase
101455775
Messenger RNA biogenesis [BR:
ccat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101455775
mRNA cycle factors
Common to processing body (P body) and stress granule
101455775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Helicase_RecD
DEAD
UvrD-helicase
AAA_16
AAA_22
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_10
Motif
Other DBs
NCBI-GeneID:
101455775
NCBI-ProteinID:
XP_004518893
LinkDB
All DBs
Position
Unknown
AA seq
1224 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEENDLIGADTQASDFDFRDFTLPSQSQTQASQLEGIGGSAAV
QNKLNALTNNLAELQFEEEDEDTSILAVKELPVHACKYCGIHDPGTVVMCNNCKKWFCNG
RGSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFIPAKADSVVVL
LCRQPCAAQNSLKDMNWDQDQWKPLITDRSFLPWLVKVPTEQEQLRARQISAAQINKLEE
LWKENIDATFQDLEKPGIDTEPSQVLLRYEDGYQYEKVFGPLVRLEAEYDKKLKESQTQE
GIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGEMHKSWSEVGHVIKVPDNF
GEDVGLELKSSAGAPVKCTSSFAVDFIWKCTSFDRMSRALKVFAMDRSSVSNYIYARLLG
HGRHDGSDELLFRGPIPKLFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSA
TIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRLCAKSREAIDSPVSFLALHN
QIRNMETNIELKKLQQLKDETGELSSADEKRYRTLKRAAEHQLLEAADVICCTCVSAGDV
RLARIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKIDFPWPQPDR
PMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIITPYEGQRAYLV
QYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALT
RSKYGTIIVGNPKVLSKQPLWNHLLNFYKDRKVLVEGSLNNLKESLIQFQKPKKIVNTLN
MGAHFMTTMMADAKEAMIPGSIYDRSGHYGYSSSGVGASNYGNSGLGLGLGYGGGNNIGY
GGGPAAAQMQAAAAAQSINQFMGGNFGAIGARSNSGPSGPGNQAAVNAQQWNHHHHHDSI
SYISPERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQAIQAAAKQGRRSGAATATGMMN
NNIGGAGVSKMFNNFNSTATSASNRTQNSKQLKTIVPISTNATTTTTKSPAVSADDVASV
LIGGGGAAASQNNVLPLTQQNMSQQMSQPGGFTLSQQPELSQDFGQISQIDSILSQDVNF
SAGNLNTDRIKFGLNSQSQFSQPY
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacggtcctagttcccagactctgacgtttttagatacagaggaa
aatgatttgattggggcagatacccaggcatctgattttgatttccgcgactttacgttg
ccttctcagtctcaaacacaggcttcgcaactggagggaataggaggcagcgctgcagtt
caaaataaactgaatgccttaactaacaatttggctgagttgcaatttgaggaagaagat
gaagatacatccatactagccgtaaaggaactacctgtacatgcctgtaaatattgcggc
attcacgatcctggtacagtagttatgtgcaacaattgtaaaaaatggttttgtaatgga
cgtggtagcacatctggttcacacattgttaaccacttggtgcgtgctaaacatcgggaa
gtaacactacattcggagggaccgcttggggaaactgtgctcgagtgttattcttgtggt
gtgcgcaacgtgtttgtattaggattcataccggcaaaagccgattcggtagtcgtgctg
ttgtgtcgacaaccgtgtgccgcacaaaactcattgaaagatatgaattgggatcaagat
caatggaaacccctaattacggatcgttcgttcttaccatggttggtaaaagtaccgacc
gaacaagagcaattacgtgctcggcaaatatccgctgcccaaattaataaattggaagaa
ttatggaaggagaatattgacgcaacctttcaagaccttgagaaacctggtatagacact
gaaccatcgcaagtgcttttgcgttatgaagatggttatcaatatgaaaaagtttttgga
cctttagtgcgtttagaagcagaatatgataaaaaattgaaagaatcgcaaactcaagag
ggtatagaagtacgttgggatgttggcttgaacaaaaaaaccatagcatatttcacgttg
gcaaaaactgattcagatatgaagctaatgcatggcgatgaattaagattacgttatgtt
ggagagatgcataagtcatggagtgaagttggtcatgttataaaagtgcccgacaatttt
ggtgaagacgtcggactggagttgaaatcctcagcaggtgcaccagttaaatgtacttct
agttttgccgtcgattttatctggaaatgcacttcatttgatcgcatgagtcgtgctttg
aaagtgtttgctatggaccgcagttccgtttctaattatatttacgcacgccttcttgga
catggtcggcatgatggtagcgatgaactactgtttcgcggccccataccaaagcttttc
agtgcaccgaatttgccagatttgaatcgatcgcaagtatatgctgttaagcacgcttta
caaaggcctctaagcttaattcaaggtccgccaggtactggcaaaacagttacctcagct
acaatagtttatcaattagtaaagcagcatggcggtaccgtgcttgtatgtgcgccaagt
aacaccgccgtagatcagcttactgaaaagatccatcgaactaatttgaaagttgtgcgc
ctttgtgccaaatctcgagaagccatcgatagtcccgtgagcttcttagctctacataac
caaattcgcaacatggaaactaatattgagttaaagaagttgcagcaacttaaggacgaa
acaggcgaattgagttcagcagatgaaaaaaggtatcgtacattgaagcgggctgctgag
catcaattacttgaggcagccgatgttatttgttgtacatgcgtgagcgccggtgacgtt
cgcttggcgcgcataaaattcacatcgattcttatagatgaatcaatgcagtctacagag
cctgagtgtatggtaccagtggtattaggtgcaaaacaattaattcttgttggcgatcac
tgtcaattgggacctgtagtgatgtgtaagaaagcagccaaagcaggtttatctcaaagt
ttattcgagcgactggtagtattgggtatacgcccttttcgcttggaagttcaatatcgt
atgcatccagaattatcgcaattcccctccaacttcttttatgaaggctctttgcaaaat
ggtgtgtgtgctgaggatcgtaaattaaagattgatttcccttggccacaacctgaccgg
ccaatgttctttcttgtgactcaaggccaagaagaaattgccggctctggcacttcttac
ctgaatcgtactgaagcagctaatgtggaaaaaataacaacacgttttctcaaagctggt
gttaagccagaacaaatcggcatcattaccccttacgaaggtcagcgcgcttatttagtg
caatacatgcaatatcaaggtagtttgcactcaaggctatatcaggagatcgagattgcc
agtgtcgatgctttccaaggtagagaaaaagacattattataatgtcttgtgttcgctcg
aacgaacgacaaggtattggttttctcaatgatcctcgtcgtttgaacgtagcattaact
cgctctaaatatggcacaataattgtgggaaatcccaaagtgttgtcaaaacaaccactt
tggaatcacttactcaatttttacaaggatcgcaaagttttggtggaaggttcattgaat
aaccttaaggaatctttaatacaatttcaaaaacccaaaaagatagtgaacactttaaat
atgggtgcccactttatgaccactatgatggccgatgccaaagaggcaatgattcccggc
tctatctacgatcgttccggtcactatggttactcatcaagcggtgttggtgcctcaaac
tatggtaacagcggactgggcttaggtttgggctatggaggcggcaataatataggttat
ggtggcggtccagctgctgcccaaatgcaagcagcggccgctgctcaaagtataaatcaa
tttatgggcggtaactttggagctattggtgcaagaagcaatagcggtccaagtggtcct
ggtaatcaagcagcagtcaatgcacaacaatggaatcatcaccatcaccacgattcgatc
agttacatttcacccgaacgtgctcaggctgcaatgaacaatatgccagtgcctgttggc
atgttcatgaatatgagcaatattccaccgcgtttctataatcaacaccaacaggcgata
caggcagcagcgaagcagggccgtcgcagcggtgccgctactgctactggcatgatgaat
aacaacattggtggggctggcgttagcaaaatgttcaataatttcaattcgactgccacc
agcgcatcaaataggactcaaaactcaaaacaactcaaaaccattgtaccaatatctacc
aatgcaacaacaacaacaacaaaatcgccagctgtcagcgccgacgatgtggcaagcgtt
ctaattggaggcggtggtgcggcagcatcacagaacaatgtcttgccgctaacccagcaa
aatatgtcgcagcaaatgagccagcccggcggctttacattgtcccaacagcccgaacta
tcgcaggactttggccaaatttcgcaaattgatagcattctatcgcaagacgtaaatttt
tcagcgggcaatctaaatacggatagaatcaagttcggcctgaatagtcagagtcaattc
tcgcagccctattga
DBGET
integrated database retrieval system
