Ceratitis capitata (Mediterranean fruit fly): 101457473
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Entry
101457473 CDS
T07533
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccat
Ceratitis capitata (Mediterranean fruit fly)
Brite
KEGG Orthology (KO) [BR:
ccat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccat03041
]
101457473
Enzymes [BR:
ccat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101457473
Spliceosome [BR:
ccat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101457473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
Ank_2
OB_NTP_bind
Ank_5
AAA_22
Ank
HA2_N
AAA_19
nSTAND3
ATPase
Ank_3
AAA_11
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
101457473
NCBI-ProteinID:
XP_004518807
UniProt:
W8CE90
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MLPSKSNNKRNSSTNELNLAEGVRLQLQQRISEFLAGTDIELVIPELSNAERKYLHKYIA
RLGLSSRSYGSKNNRVLHITHRKRLSTLGLIHKLELLTACRNLMEESLRLYEIPLVDRIP
TNQNQISRHQFQNRTRLRSEALLLGLGPRLVPPQPKRISSELYRDKQELPIYFYKEEINK
MLLQNSIFIISGETGSGKTTQVPQYILNDNMLRNRPCRIVVTQPRRVAAVSVSQRVAEER
GEKIGDTVGYQIRLESRVQKTTNLIYTTSGCLLRSIMADPKDFFRKISHLIIDEIHERDK
YTDFILITIKEQLKQNKNLKVILMSATMDINLLSKYFEKCPVVTVPGQGYNVKIFHLEDI
LYRTGYRTALMEKYLSSMKDINSKNCENLPKIVEKKMTQSFTTSTTLNDEHLQKGIDVII
DQCFFENYDSEEELLALFDQIQYFIESEGMPIDTANSRTGVTPLMAACKCNLPKYLELFL
FHQANVHLTDLQGLTALDYAKLHSDQTCIKILQNSDASLKNHTRLSQEPEEKQRILFAYH
QQFNDENEIDHDLILSLLEGLYRSPHPGAIMVFLPGYNDIVQQRDLIQSTLPANTYRICI
LHGQMDSHDQFDALNRHTVRKIILSTNVGQTSITIPDLAYIIDSGKVKMKTHDSITESSQ
LQSVWISKADANQRSGRAGRTQNGVCYRLYSTATYEYMPEFCIPEFMRIPLTEICLYAKT
LDGEKDVQSYLARALNPPTQISVQNAIKKLQLLEVFDDNEEVTNLGRHLVEIPLDVHLGK
CLLYSIFFKCFDSILTIVAYHSVKDPFILPTDRAAQGHASFQRKSFAGKTFSDQLGILSL
YKSYCSIRNNRKRARDFCSKYFLSQTAMETFYATRRQIADLACQKFRVGQQATLFNDDWN
MVRYCLVAGFYPNVAVIDRQQGTLTSGVEKQLILQRTSALNPPGMKNLKEFIDQLPYDWV
IFYEKSRLGNKYSINMNTIVSPLVIALQCGRDCVLAEDSSEDSEISDNEEDLSECTKTES
EGKVKELSKNINSFSLLESAVVSNQKAIMSLDSWIKFEMPIIDANMLLRVRRLIKSQFEL
FLQGRNTIPPSTAAFHVQKLLHCLDNGSPK
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgttgccatcaaaatctaacaataaaagaaacagttctacaaacgaattgaatttagct
gaaggcgtccgattgcaattgcagcagcgcatttcagagttcctagccggcacagatatt
gaattagttattccggaattatccaatgctgagcggaagtatcttcataaatacattgct
cgtcttggattgtcatcccgaagttatggatcaaaaaataaccgcgtattgcatattaca
catcgtaaacggttatcaacattgggtcttattcacaaattggaactgttaactgcctgc
agaaatctaatggaagagtctttacgtttatatgagataccattggtagacagaatccca
acaaatcaaaaccaaatatctcgacatcagtttcaaaacaggacacgcttgcgtagtgaa
gcactactccttggattgggccctcgcctagtaccaccacaacccaagcgtataagttct
gagctttatcgagataaacaagagctacctatttatttttataaagaagaaattaataaa
atgttgctgcagaattcaattttcataattagtggtgagacaggatcggggaaaactacg
caagtgccacaatatattttaaacgacaatatgctcagaaatcgcccatgtagaattgta
gttacacagccaaggcgcgtagcagcagtgtctgtttcacaacgagtggcagaagaaaga
ggtgaaaaaatcggagatactgtcggctaccaaataagattagaaagtcgagttcaaaaa
accacaaacctgatatatacaacaagcggctgtcttctacgttcgataatggcagatccc
aaggatttttttcgtaaaatatctcatttaataatagacgaaattcacgaacgtgataag
tacacggattttattctcataaccataaaggagcaacttaaacaaaacaaaaatctcaaa
gttattttaatgtcagctacaatggatattaatttactttcaaaatattttgaaaaatgc
cctgtcgtaactgtacctggacaagggtataatgtaaaaatttttcatcttgaggatatt
ctttatagaacgggctatcgaactgcgctgatggagaaatatttaagttctatgaaagat
atcaactcaaaaaattgtgaaaatctaccaaagattgtagagaagaaaatgactcaatct
ttcactacttcaactacattaaatgatgaacatttgcaaaaaggaatagatgttattatt
gaccagtgtttttttgaaaattacgacagtgaagaggaattacttgctttgtttgatcag
atacaatattttattgaaagtgagggtatgcccatagataccgctaattcacggacagga
gtcacacctcttatggcagcgtgtaaatgcaacttaccgaaatatttagaattgtttttg
tttcatcaggctaacgtccatctcacggatttgcaaggactcaccgctcttgattacgca
aaattacattcagatcagacgtgtataaaaatattacaaaactctgatgctagtttaaaa
aatcatacgcgattaagtcaagaaccggaagaaaaacagcgaattttatttgcatatcac
caacaatttaacgacgagaatgaaatcgaccatgatctgatcttatcgctattagaagga
ctataccgcagtcctcaccccggagctattatggtgtttctaccaggttataatgatata
gtacagcaaagagatctcattcagagtacacttcccgctaatacatatcgtatttgcatt
ctgcatgggcaaatggattcacatgatcaatttgatgccctaaacagacatacagtacga
aagattattctttcaacaaatgttgggcaaacatcaattacgatacctgatttagcttac
atcattgattcgggtaaagtaaaaatgaaaacccatgactcgatcacagaatcatcacag
ttacagtcggtatggatatcaaaagctgatgcaaatcagcgatctggtcgtgccggtcga
acccagaatggtgtctgttatcggttatattccactgcaacatacgaatatatgccagag
ttttgcattcctgaattcatgcgaatacctttaacagaaatttgtttgtacgctaagaca
ttagatggtgaaaaagatgtgcaatcatatttagctcgcgctttaaacccacccacacaa
ataagtgtgcaaaatgccataaaaaagctacaattactagaagtttttgacgacaacgaa
gaagtgacaaacttgggacggcacttagttgagattccgttggatgtacatcttggaaaa
tgcttattgtacagtattttttttaaatgtttcgattcaatattaacaatagtcgcatat
cattccgtaaaagatcccttcatcttaccaacagaccgtgcagcccaaggtcacgcttca
ttccaacggaaatcttttgcaggaaaaacgttcagcgatcagttggggatactttcgtta
tataaatcttattgctctatacgaaacaatagaaagcgagctcgagacttttgtagcaaa
tattttttgtcacaaacagctatggaaacattttatgcaacacgacgtcagattgctgac
ctagcatgccagaaatttcgtgttggtcagcaagcgacactattcaatgatgactggaat
atggtccgttattgtttagttgcaggcttctatccaaatgtagcagtaattgatcgtcaa
cagggaacgctcacatcaggagtagaaaagcaattaatattacaacgaacatcagcatta
aatccaccaggtatgaaaaatttaaaagaattcattgaccaacttccatacgattgggtt
attttctacgaaaagtcgcgactagggaataaatattcgataaacatgaacacaatcgtt
tcgcctttagtaattgctcttcagtgtggacgggattgtgtattagctgaagattcttcg
gaggactcggaaatttcagataatgaagaagacctttcagaatgtactaaaacggaatct
gaagggaaagtaaaagaattatcgaaaaatataaattctttttcattattagaatctgcg
gtggttagtaatcaaaaagcgataatgtctctggatagttggattaagtttgaaatgccc
attatcgacgctaatatgcttttgcgagttcggagactcataaagtcccaatttgaattg
tttttacaaggaagaaacacaataccaccatcaacagcagcttttcatgtacaaaaactc
cttcactgtttagacaacggttcgccaaaataa
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