Chryseobacterium carnipullorum: EG346_04685
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Entry
EG346_04685 CDS
T06793
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccau
Chryseobacterium carnipullorum
Pathway
ccau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EG346_04685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccau03400
]
EG346_04685 (mfd)
Enzymes [BR:
ccau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG346_04685 (mfd)
DNA repair and recombination proteins [BR:
ccau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EG346_04685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AZA47525
UniProt:
A0A376EJN1
LinkDB
All DBs
Position
complement(989173..992541)
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKPIHEKFLPDLLHQEFGKEIFTQLENSQHISVKGSAGSSVSIFVAELFLTRKKTILY
LVDDKEDALYANTEMEDLMGKDKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGKS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLTHYSFQQTDFVSEPGEF
SVRGGIVDVFSYSYEKPYRLTFFGNEVESIKTFDIETQLSVDKVKDFQLVSNMNFSVTGT
RVSLLQLLPVDSFIISRNGPVGMQKIRTFYEKSLEKYDTLSKDIAHRKPQELFISDQEFL
FDFKKFKTIDFAGTPIEGIKEITEIKVEQLPQPSFHKNFELLIEDLEEKQNEGFDTWISF
STEKQRERLESIFEELEHELPFKSFRSELHEGFVDNGQKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKFNGPDGKEVVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAERKTAKGFS
FTPDSYLQNELEASFIYEDTPDQEKATIDVKRDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHFRSFKERLKDFPVNVSYVNRFRTAKQKAEALDGLKNG
KVDIIIGTHQLVSASVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLTGFSEEILRDAVSYELQRDGQVYFINNRVENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVATTIVESGVDVPNANT
IFINDAHRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKMMQEALEELKDDADFENLFDNEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEINNEKDLHQFELELIDRFGA
LPQEAVNLLKSVALKWLAADIGFEKIVMKNGVFLGYFPANPQDKFYQTDRFRHIISYLTQ
NPAEAQLKEKVGKEGNLLMMRKEKVKNVDEVNMLLKTIIGHH
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagctaaaacccattcacgaaaaatttcttccggaccttcttcatcaagaatttgga
aaagaaatatttactcagttagaaaacagccagcatatttccgtaaagggaagtgccggt
tcttcggtttctatttttgtggccgagctttttttgacccggaagaaaaccatcctttat
ctggtagatgataaagaagatgctttgtatgccaatacagaaatggaagacctgatggga
aaggataaagtactgtactttcctgcaacacacctggagccttatcaggtagaaaaaacg
cagaatgccaatcttgtccttagaacagaggtcttaaataagatcaattccggaaagtct
cccaaagttatcgttgcctatgcgggagcgttatctgaaaaggtcttaaagaaagaagat
ttcaaggcgatatcacaccatataaaggtaggggatcagcttgatttcgattttgtagac
gagttgcttactcattatagctttcagcagacagattttgtttctgaacccggagaattt
tctgtcagaggtggaattgtagacgtattttcgtattcttacgaaaaaccataccgtctc
acattcttcggaaatgaggtagaaagtattaaaacttttgatattgaaactcagctttcc
gtggataaagtgaaagattttcagctggtttccaacatgaatttttctgtaactggaacc
agagtttcactgctgcaactattgcctgttgatagctttatcatttcaaggaacggtcct
gtcggaatgcagaagatcagaactttttatgagaaatctctggagaaatatgatactttg
agtaaggatattgctcacagaaaacctcaggagctttttatatcagaccaggaattcctg
tttgattttaaaaagtttaaaaccattgattttgcgggtactcctattgagggaatcaaa
gaaatcaccgaaataaaagtagaacagcttccacaaccttcttttcataagaattttgaa
ttattaattgaagatcttgaagaaaagcagaatgaagggttcgatacctggatctctttt
tcaactgaaaagcagagagaaaggctggagtctatatttgaagaactggaacatgaactt
cctttcaaaagcttcaggtctgaacttcatgaggggttcgtagataacgggcagaagctt
ttggtctatacagatcatcagatctttgaccgttaccagcggtataaagcgaaaaatact
tttgcaaaatctgaacagcttaccctgaaagatctgatgtccttgaaaattggagactac
attgctcacattgatcatggaatcggaaaattcatgggacttgttaaagttaataatgat
gggaagatccaggaatgttttaagctaacctataaaaatggagacttattatatgtaagt
attcattcgcttcataagatctcaaaattcaatgggccggacggtaaggaagttgtcctt
agtaagctggggtcaccggcctggaaatctttgaagcagaaaacaaaagccaaagtaaaa
caaatagcttttgaccttataaaattatacgctgaaagaaagacagcaaaaggattttct
ttcactccggattcttatctccagaatgaactggaagcgagctttatttatgaagacact
ccggatcaggaaaaagcaaccattgatgtaaaaagggatatggaagcagatacggtgatg
gacaggctggtctgcggagatgtggggtttggtaaaacagaagttgctatccgggcagca
tttaaagcggcaacggatggaaagcaggtagctgtgctggttcctacaacgattcttgct
ttccagcatttcagaagtttcaaagaaagattgaaagattttccggtgaatgtttcttat
gtaaacaggttcagaacagccaagcagaaagcagaagctttagatggtcttaaaaatgga
aaggtagatattataataggaacccatcagctagtgagcgcttcagttaaatttaaagat
ttaggattgctgattattgatgaagagcataaattcggagtttccgtaaaggataagctg
aaaaccttaaaaaataatgttgatactcttacattaactgctactccgatcccaagaacc
cttcagttttcgctgatggcggcaagagacctttcggtgatcaaaactccaccaccaaac
agacagcctgttgatacacagttgacaggatttagcgaagaaatactcagggatgctgtt
tcttatgagcttcagagagacgggcaggtttattttatcaacaacagggtagaaaacctt
aaagatattgccgggctcatccagagactggtccccgatgcaagagtcattacaggacat
ggtcagatggaaggcaagcaactggaaaaaaatgtgcttgattttatggaaggaaagtat
gatgtgcttgtggctactactattgttgaaagtggagtagatgttcccaatgcgaatacc
atctttattaatgatgcgcaccgattcggaatggcggatcttcaccagatgagaggaaga
gtagggcgtagcaacagaaaagcattctgttacctgattacacctccttatgatatgatg
acttccgatgccagaaaacgactggaagcgattgaacagttttcagatcttggaagtgga
tttcagattgccatgaaagatttggagattcgtggtgccggagatcttctgggagcagaa
cagagtggttttattaatgagatgggttttgaaacgtatcagaaaatgatgcaggaagct
ttggaagagcttaaagatgatgcggacttcgaaaatttatttgataatgaagaggacagg
cagaaacttttcaaatccgttaaagatgtaaatattgatacggatcttgagctgatgcta
ccggatttctatatctccaatacagaagaaaggctgctcctgtatcagaaaattgcagag
atcaacaatgagaaggatctccatcagtttgaattggagctgattgatcgttttggtgct
ttacctcaagaagcggttaatttgttaaagagtgttgcgctgaaatggcttgctgccgac
atcgggtttgaaaaaatcgttatgaagaatggcgtatttttaggatattttccggctaat
cctcaggataagttttatcagacggatagattcaggcatatcatcagctatttaacccaa
aatccggcggaagcacaacttaaagagaaggtgggaaaagaaggaaatctactcatgatg
agaaaagaaaaagtgaaaaatgtggatgaggttaatatgctgttgaagaccattatcggg
catcattaa
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