Chryseobacterium carnipullorum: EG346_04855
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Entry
EG346_04855 CDS
T06793
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccau
Chryseobacterium carnipullorum
Pathway
ccau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG346_04855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccau03021
]
EG346_04855
03019 Messenger RNA biogenesis [BR:
ccau03019
]
EG346_04855
Transcription machinery [BR:
ccau03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EG346_04855
Messenger RNA biogenesis [BR:
ccau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EG346_04855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AZA47557
UniProt:
A0A376EK34
LinkDB
All DBs
Position
complement(1031004..1032869)
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AA seq
621 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSNDNDKIFAVLDFQASNPKVAKDYFNATETS
MDTEEKPADKPAKAPVKKAAPKRQPAKPKAEVKAPAEAKPQAEETKVEEKVPVAEEIKQE
EPKTETVSAPEENNSAQAKKKRKRVVANTGNTETPQERAEAPKNAEPQESAPSEEKPATS
QPQARSQQKGHNNPQNSGNQNKNPNQHQNQNQGQSQNPNQHQNQNPNQNQHRQHADRNEE
HHSEHRKEFSFDGMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTG
DTVKGIVRLPKEGEKYFSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLTGNGSTL
STRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVT
DMERSVNAEVIASTFDEAADKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTV
TPASGKVLSGGVDANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKG
TGNMELQLDRKIANRRIYPAIDLVSSSTRRDDLLLDEVTSQRMWIFRKYLSEMNPVEAME
FVNKNIRGTLNNEEFLMSMNK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaaa
gatttaggcgttaaagttgctagaaacagcaatgataatgataagatctttgccgttctt
gactttcaggcttctaaccctaaagttgcaaaagattatttcaacgccacagaaaccagc
atggatactgaagaaaaaccggcagataaacctgctaaggctcctgtaaaaaaagcagcg
cctaaaagacaacctgccaagccgaaagcagaagtaaaagcaccggcagaagctaaaccc
caggctgaagaaacaaaagtagaggaaaaggtaccagtcgctgaagaaataaagcaggaa
gaacccaaaactgaaacagtttccgctcctgaagaaaacaactcagcacaggctaagaaa
aaaagaaaaagagtcgttgccaacaccggtaatacagaaactccacaagaaagagctgaa
gctcctaaaaatgcagaacctcaggaatctgctccatcagaagaaaagcctgctacttcc
caacctcaggccagatcccaacaaaaaggacacaacaatccgcaaaacagcggaaaccaa
aataagaaccctaatcagcatcaaaaccaaaatcagggtcagagccaaaatcctaatcaa
catcagaatcagaaccctaatcaaaatcagcacagacaacatgctgacagaaatgaggag
catcattctgaacacagaaaagaattcagttttgacgggatggtaagcattgaaggggtt
ttggaaatccttccggataactacggattccttcgttcatccgatttcagctatatctct
tctcctgatgatgtctatgtatctacagcacagatcagaaattttggtttgaaaaccgga
gatacggtaaaaggaattgtaagactaccgaaagaaggtgaaaaatatttttcattactg
aaacctacggaagtaaacggacgtgatcttgcgttcattaaagaccgtgtcgcctttgaa
tatttaactccgcttttccctgaagagaaattcaatcttaccggaaacggatctaccctt
tcaacaagaattgtagatcttttcgctccaatcgggaaaggacagagagccatgatcgtt
gcccagcctaaaacaggtaaaacgatgttgcttaaagatattgccaactctattgcagcc
aatcatcctgaagtatatatgatggtccttctgatcgacgaacgtcctgaagaagttacc
gatatggaaagaagtgtaaatgcagaagttattgcctctacatttgatgaagcagcagat
aagcacgtaaaagtggctaaccttgttttagcaaaagctcagagaatggtggaatgcgga
catgatgtagtgatccttctggattctattacaagattggccagagcatacaacaccgtt
actccggcatcaggaaaagtgctgtccggtggggtagatgccaatgcccttcacaaaccg
aaaagattttttggggctgccagaaagattgaagggggtggatcactaactattattgct
acagcacttatcgatacgggttctaaaatggacgaagtaatctttgaggaattcaaagga
acgggtaacatggaacttcagttggacagaaaaattgccaacagaagaatttatcctgcg
attgaccttgtatcttcaagcacccgtagagatgatcttcttttagatgaagtaacttct
cagagaatgtggatcttcagaaaatatctttctgaaatgaatcctgtggaagctatggaa
tttgtcaataaaaacatcagaggaactttgaataatgaagaattcctgatgtctatgaat
aaatag
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