Chryseobacterium carnipullorum: EG346_13585
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Entry
EG346_13585 CDS
T06793
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccau
Chryseobacterium carnipullorum
Pathway
ccau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG346_13585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccau03019
]
EG346_13585
03009 Ribosome biogenesis [BR:
ccau03009
]
EG346_13585
Enzymes [BR:
ccau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG346_13585
Messenger RNA biogenesis [BR:
ccau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG346_13585
Ribosome biogenesis [BR:
ccau03009
]
Prokaryotic type
rRNA helicases
EG346_13585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZA49140
UniProt:
A0A1M7FJD8
LinkDB
All DBs
Position
2945134..2946849
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AA seq
571 aa
AA seq
DB search
MNLFTESNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDETSRKIQFLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIMDQIRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILRETPDTKQT
FLFSATMNKEVERISKNYLTTPHRISVGSINEVKKNIKHEYYVVGYRQKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISISLIKPEESRKLKQIKST
TKIDIVEKFIPTGEDIIKAQVEGVFEKLFTEHEEDIFEFNDSLIPDLSAFTKEELVHKLL
QFQLKDLALYYKDKHDLVDQKFSSRDDDYSRRDRDRGRDRDRGRDRDRGDRDVRGSRDSR
DRGGKPRRKDENMVRFFFNLGKKDQLKKLDVLEIINKATAGKSKKRAEIGDIEILEKFSF
FEVEKSFSENVMSNIPSMKFKGKEMRAEVAN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagtccaatttaagtcctgacatccttaaggcaattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatccctttcattctttcagatatt
cgcgatttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgaaacgagtcgcaaaatccaatttttggtgctttgtccgaca
cgggaactatgtcttcagatttctaaagacataaaaaattattccaagtacatgaaagac
atcaaaaccacagcggtttacggtggaagcagtattatggatcagattcgttctttaaag
gacaagccgcaaattattgtaggtactccagggagagtaatcgaccttatcaacagaaaa
gcacttgatttttctgctattcattggttagttttagacgaagctgatgaaatgctttca
atgggtttcaaagatgagttggaaacgattctgagagaaacaccggatacaaagcaaact
ttcttgttctcggcgacgatgaataaagaagtggaaagaatttctaaaaattatcttacg
actccacaccgtatttctgtgggttctattaacgaagttaagaagaacatcaagcacgaa
tattacgtagtaggataccgtcagaaaaaagaagctcttaagagattaattgatgccaac
ccgaaccagtattctattttgttctgtagaacgagaatggaaactcaggaggtggcagat
ttcctgatgcagaatggctatgcagctgatgcacttcacggagatctttctcaggcacag
agagatacagtaatgaagaaattcagactgaaaaatattgatatccttgtagcgacagac
gttgcagcaagaggtttggatgtaaactctctgacgcacgttatccattattctttacct
gatgatccggaagtattcgttcacagaagtggaagaaccggtagagcaggaaaagatggt
atttcaatttctttaattaaacctgaagaaagcagaaaactgaagcagataaaatctaca
acgaaaatcgatattgtagaaaaattcattccaacaggcgaagatattatcaaagctcag
gtggaaggtgtttttgaaaaattatttacggaacacgaagaagatatctttgaattcaat
gatagcttaattccggatcttagtgcgtttacaaaagaagaattggtacacaaactattg
cagttccagttaaaagaccttgctttgtactacaaagataagcatgatcttgttgatcaa
aagttcagcagcagagatgatgattattcaagaagagacagagatagaggaagggaccgc
gatagaggaagagatcgtgaccgtggagaccgtgacgtaagaggaagcagagatagcaga
gaccgtggcggaaaacctagaagaaaggacgaaaacatggtaagattcttcttcaacctt
gggaaaaaagatcaattgaaaaagcttgatgttttagaaatcatcaataaagctactgcc
ggaaaaagcaaaaaaagagctgaaatcggtgatattgaaatcttagaaaaattctccttc
tttgaagtggagaaatctttctcagaaaatgtaatgagcaatattccttcaatgaaattt
aaaggaaaagaaatgagagctgaagtagcaaactaa
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