Chryseobacterium carnipullorum: EG346_19435
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Entry
EG346_19435 CDS
T06793
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccau
Chryseobacterium carnipullorum
Pathway
ccau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG346_19435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccau03019
]
EG346_19435
Enzymes [BR:
ccau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG346_19435
Messenger RNA biogenesis [BR:
ccau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG346_19435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Helicase_C_2
CMS1
HEM4
SWI2_SNF2
RNase_P-MRP_p29
Cas3-like_C_2
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AZA50214
UniProt:
A0A1M7IMM9
LinkDB
All DBs
Position
complement(4195627..4196769)
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AA seq
380 aa
AA seq
DB search
MSFESLGLSHNIIRSVNKLGYLKPFPIQEQAVPVILQGKDLMGIAETGSGKTACFVMPIL
EKLQNAEVKKDRNVQVLILVPTRELAIQIDEVFRAFTENLKREIRTMAVYGGVSINPQMK
GMFGVEVLIATPGRLLDLIDHNALSISGIQHLVIDEADKMFQLGFGEEMNKLFGLMPVVK
QTTLFSATLNDKVSEMKERLSINPTIIEIKKDEVEIDHIEQLAYHVSPENKGPFLRYLIK
EKKVEKALIFVSSTRSADNLVEKLKKNKIKAVAIHSQKSQGARRNNLEEFKVNGAQILVA
TDLIGRGIHIESLPCVINYELPRSPLDYIHRIGRTGRANEKGTAINILTDDELQHFRVIQ
KKMGKKVTLQRTEGIDLHGY
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgagtcgttaggattatcacacaatattattcgttctgtcaacaaattaggg
tatttgaagccatttcctattcaggagcaggctgttcctgttattttgcagggaaaagat
ttgatgggaattgccgagacaggttccggaaaaacggcttgtttcgtcatgcctatttta
gaaaaactgcaaaatgcagaagttaaaaaagatcgtaatgttcaggttttaatattggtg
cctacccgtgaattagccattcagattgatgaagttttcagagctttcacagaaaatctg
aagcgtgagattcgcacaatggcggtttatggaggggtttctatcaatccgcaaatgaaa
ggaatgtttggggtagaagttcttattgcaacgccgggccgtttattggatttaattgat
cacaatgcattgagtatttcagggattcagcatttggtgattgacgaagccgataaaatg
tttcagcttggtttcggagaagaaatgaataagcttttcggtttgatgcctgtggtgaag
caaacaactttgttttcggcgactttaaatgataaagtttcagaaatgaaggaacgttta
tccattaatcctacaatcattgaaatcaaaaaggatgaagtagaaatagatcacattgag
caattggcgtatcacgtttctccggaaaacaaaggtccttttttaagatatttaatcaaa
gagaagaaggttgaaaaagcattaatcttcgtttcttctacccgatctgcagataatttg
gtagagaaacttaaaaaaaataaaattaaagcagttgctattcacagtcagaaatcgcaa
ggcgcccgtagaaacaatctggaagaatttaaagtcaatggcgctcagatattagtggct
acagacttaattgggcgtggtattcatatcgaatcgttgccttgtgtcatcaattatgaa
ttgccgcgttctccattagactatattcaccgcattggtagaacaggccgtgccaacgaa
aaaggaactgccatcaatattcttacggatgatgaactgcagcatttcagagtgattcag
aagaaaatgggtaagaaagtaaccttgcagagaacagaaggaattgatcttcatggatat
taa
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