Chryseobacterium carnipullorum: EG346_22440
Help
Entry
EG346_22440 CDS
T06793
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccau
Chryseobacterium carnipullorum
Pathway
ccau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG346_22440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccau03019
]
EG346_22440
Enzymes [BR:
ccau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG346_22440
Messenger RNA biogenesis [BR:
ccau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG346_22440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZA50764
UniProt:
A0A1M7NQL2
LinkDB
All DBs
Position
complement(4882048..4883409)
Genome browser
AA seq
453 aa
AA seq
DB search
MEKLTFADFDLPVKILDVLADLELFEPTPIQEKSLGPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYNKAGNPTVLILVPTRELVVQVAEIVEKLTENITARVIGIYGGKNINTQKLLF
NAGCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKPKRQ
NILFSATMTEAVDEMLDQYFANPIELSLAKSGTPLEKIEQTGYKVENFNTKINLLEHLLK
NNEDMSKVLIFTNNKKNSDLLFAKIDELFPEEFDVIHSNKSQNYRLKAMKRFENEEIRGL
ITTDVMARGLDISNITHVINFETPEIPEQYIHRIGRTGRADKDGKAITFATKKEETSILD
IEVLMDKDLKFHDFPAEVKINPKKIASEEDVIIMKNPAQVKLYEGGGAFHEKKDKNKKEN
WGGPSKRKAPKKFGANRAQQKSISVSKSTKKKK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcacttttgcggattttgacctgccggttaaaattcttgatgttttagcg
gatctggaattattcgaacctacccctattcaggaaaagagcttgggccctatactttcc
gggagagatgtaatgggaatcgcgcaaaccggaaccgggaaaacattagcctatcttctg
cccgttcttaaaacatggaaatacaacaaagcagggaatccaactgttttgattcttgtt
cctacaagagaattggtagtacaggtagccgaaattgttgagaaactgacagaaaatatt
accgccagggtaattggaatatatggagggaaaaatatcaatacgcagaaactgttattt
aatgcaggatgtgatattttggtaggaactccgggaagagtaatggaccttgccattgac
aatgccatttcattgaaagaagttcagaagctgatcattgatgagtttgatgaaatgctg
aacttaggtttcagaccacagcttacccatatttttgaaatgatgaagcctaagagacag
aatattcttttctcggccacgatgacggaagcggtagatgaaatgctggaccagtatttt
gccaatccgattgagctttcattggctaaatcaggaacacctcttgaaaaaattgaacaa
actggttataaagttgaaaacttcaatacaaaaatcaatcttcttgagcatttattgaag
aataatgaagacatgtctaaagttttgatttttaccaataataagaaaaactctgacctt
ctttttgctaaaattgatgaacttttccctgaagaatttgatgtcattcactcaaataaa
tctcagaactacaggcttaaagccatgaagaggtttgaaaatgaagagatcagaggattg
attactaccgatgtaatggccagaggtcttgatatctcaaatatcacccatgttatcaat
tttgaaacgcctgaaatccctgaacagtatattcacagaataggaagaacgggtagggca
gacaaagacggtaaggcaattactttcgccactaaaaaagaagaaacttctattctggat
attgaagtattaatggataaggatcttaagttccatgatttcccggcagaagtgaaaata
aatcctaagaaaatcgcttccgaagaagatgtgatcattatgaagaatcctgcacaggta
aaactgtacgaaggaggaggagcatttcacgagaaaaaggataagaacaaaaaagaaaac
tggggtggtccttcaaaaagaaaagcacctaagaaatttggagccaacagagcccaacag
aaatcgatatcagtatcaaaatctactaagaaaaagaaataa
DBGET
integrated database retrieval system
